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Report for CCDS39092.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39092.1 Public Mus musculus 5 0610040J01Rik 23 108 98 CCDS HistoryNCBI Gene:76261Re-query CCDS DB by CCDS ID:39092.1Re-query CCDS DB by GeneID:76261See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39092.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081747.7 ENSMUSP00000080443.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081747.7Link to Ensembl Protein Viewer:ENSMUSP00000080443.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000081747Re-query CCDS DB by Protein ID:ENSMUSP00000080443
Original member NCBI NM_029554.4 NP_083830.3 Updated not alive Link to Nucleotide Sequence:NM_029554.4Link to Protein Sequence:NP_083830.3Re-query CCDS DB by Nucleotide ID:NM_029554Re-query CCDS DB by Protein ID:NP_083830
Current member NCBI NM_029554.5 NP_083830.3 Accepted alive Link to Nucleotide Sequence:NM_029554.5Link to Protein Sequence:NP_083830.3Re-query CCDS DB by Nucleotide ID:NM_029554Re-query CCDS DB by Protein ID:NP_083830Link to BLAST:NP_083830.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083830.3 313 Q99K99 313 100% 0 0

Chromosomal Locations for CCDS 39092.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 63896452 63896483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 63897955 63898864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGGGTGCAGGTGTTGTAAGATGATACAAAGCTATCTCTTTGATCCAGTTCAAGTGCCCTCGCCTGGTT
TTGTCAATGAAGTAAACAACTGCAAGTTGGAGGAAGATGACACTGTCAGACTAAAAGGCACCCAGAACAG
TGAGGTTGAGGTGCCCAGGAATGCCCTGCACGATGGGAGCCTGAGCAATTCAGAGAGCAGAGGCAGTACA
ACTGGTCTACCTCACCAAGGACCGCTCCCCCAGGAGGACTCAGAAGAGAGACCCTGTGTGGAGAAGCAGG
GTATTGTCAATGGCATCAGCCCCACTGCTACTCTGCAGTCGGTCAGGAGTTCCAGGCTCCACCAGGTTGA
CAATAGCTCCTGGGCCAGCAGCCCCTGGGTAGCCACCATAGACAGTGCTCACCTGGCTCAACCCTTCCTT
GAAGGAGAAGACTACAGGAAGCAAAGCTGCCTGCTGCCCACCTTGGAAGGGACCCAGATGGTGGGACATG
GAGACTGCAGAGCCCCTGCGGAGGCCTTGGCAGTGGCAGATCACATCCCATACATACCAGCCCCAGATTA
TCCCCAGCTCTGGAGCCCCACAGTAGACAACGCAGACCCTGAAGAAAAGGATTGTCTTTTTGAAAACCAC
TCTGAGGTGGAGCCCCTTCCGGGAATTCAGCCCAGGGTGAGCCAGCTGGGTTTGAACGTGCCCTTCTCCC
TGCAGAGAAGCTGGGACTCACTGAATGAGGCAGGGACCACAGAAGTTCTGAGTGACTACTTCAAAGAGGA
GGGTCCCACTCACCCTACGCCAGCGGCTGATTCTGGAAGTGAGCGGGAAGACCCCCACACCTACAACGGG
GACAGGGAGGGTGTTGTGGTAGATGAGGATGCTGAGGTGGCAGAAGCCCTCGCAGCATTAGAAGCTGCTA
CCGCAGGAGAAGATGCAGATGATGCCGATTAG

Translation (313 aa):
MGCRCCKMIQSYLFDPVQVPSPGFVNEVNNCKLEEDDTVRLKGTQNSEVEVPRNALHDGSLSNSESRGST
TGLPHQGPLPQEDSEERPCVEKQGIVNGISPTATLQSVRSSRLHQVDNSSWASSPWVATIDSAHLAQPFL
EGEDYRKQSCLLPTLEGTQMVGHGDCRAPAEALAVADHIPYIPAPDYPQLWSPTVDNADPEEKDCLFENH
SEVEPLPGIQPRVSQLGLNVPFSLQRSWDSLNEAGTTEVLSDYFKEEGPTHPTPAADSGSEREDPHTYNG
DREGVVVDEDAEVAEALAALEAATAGEDADDAD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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