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Report for CCDS84779.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84779.1 Public Mus musculus 4 Skint4 23 108 98 CCDS HistoryNCBI Gene:320640Re-query CCDS DB by CCDS ID:84779.1Re-query CCDS DB by GeneID:320640See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84779.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069769.8 ENSMUSP00000070676.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069769.8Link to Ensembl Protein Viewer:ENSMUSP00000070676.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000069769Re-query CCDS DB by Protein ID:ENSMUSP00000070676
Original member Current member EBI ENSMUST00000106564.7 ENSMUSP00000102174.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106564.7Link to Ensembl Protein Viewer:ENSMUSP00000102174.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106564Re-query CCDS DB by Protein ID:ENSMUSP00000102174
Original member Current member EBI ENSMUST00000106565.7 ENSMUSP00000102175.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106565.7Link to Ensembl Protein Viewer:ENSMUSP00000102175.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106565Re-query CCDS DB by Protein ID:ENSMUSP00000102175
Original member Current member NCBI NM_001347180.1 NP_001334109.1 Accepted alive Link to Nucleotide Sequence:NM_001347180.1Link to Protein Sequence:NP_001334109.1Re-query CCDS DB by Nucleotide ID:NM_001347180Re-query CCDS DB by Protein ID:NP_001334109Link to BLAST:NP_001334109.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334109.1 474 A7TZF3-1 474 100% 0 0

Chromosomal Locations for CCDS 84779.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 112086993 112087065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112117942 112118289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112119836 112120117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112124563 112124670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112125147 112125200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112135971 112136078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112143707 112143829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112146492 112146617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112157986 112158111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112165682 112165758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGGGAGCTACAGAAGTACTTACTTCATACTGTGTTGTCTTATGCCTCCTCCAGATGGTAGCACTGAGTT
CAGGACACTTTACAGTGATTGGCTCACAGAGGCCCATATTGGCTACATTGGGTGGAAATGTAGAACTCAA
TTGTCAATTGTCCCCACCACAACAAGCACAACACATGGAGATTCGCTGGTTTCGGAACCGTTATACACAA
CCTGTGCACCTATACCGTAATGGTAAAAACCTACATGGAGAAACTATGTCTAAGTATGTAGAACGGACAG
AACTCCTGACTGATGCCTTTAATGAGGGGAAAGTGATCCTCAGGATTCTTAATGTAACTGTTGATGATGG
TGGTGCATACCACTGTGTCTTTAAAGATGGTGAATTCTATGAAGAGCATATCACAGAGGTCAAGGTCACA
GCCACAAGCTCAGACATACAGATTCTCATGCATACGCCTAATATTAAAGGTGTGATGTTGGAGTGTCATT
CAGGCGGTTGGTTCCCACAGCCTCATATGGAATGGAGAAATAGCAAAGGAGAGGTCATTCAAGCCACATC
AAAATTCCATTCACAGGATAAAAACAAATTGTTCAACATGTCAATGGTTCTTTTTATTGAAGCCAGCTCT
CACAGGAATGTCATTTGCTACTTTCAAAACCTTGTAACTCACCAAGAACAAAGCATAAATATTGTTCTAT
CAGGTGAACTGTTTTCATGGAAAATTGTTTGGATAATGATTCTGAGCACAATATCATTTGTGATGATAGA
TTTCTGCATGACTTACTGTGTTCAGCAACAGCTCATACATGAAGAGTCACTGTCTACCGTGGACAATGAT
CAGTGTGAGTCTGATCAATCTGAGGGTACCTGCTACAAGAGAAATTATCCTTGGATTATTATTGCAGTGG
TACCCATAATTTCAGTGTTTGCAATCATAGGAGTCATGCTCTTTTTGCATCTAGAACAAAGAGTTACAAT
TCTAGAACAACATTTTGAATTGGACACCTTGTGGTTGGAAGATATTAGTGTGATCCTGTGTGTGGTGATA
GTGTCCAACATCAATCTCATACCTTTGATATACTTCAGATTGCATGAACATGTACCTAGATTCAAAGACC
GTTCCCCAATATTAAACAAAGCAGTGGTATTCCTGCATTTCATTTATTTCTCAATCGTATGTGGAACAAT
CCTTCTTGTGCATCTGCAATTACGTAACAAAGTTTCTATTTCAGATTCCTTATTTTCCTTGTACAACAGC
TGGCTGACAGATATTTCAATGATTTTAGGATTTCTATTGTCAATTTTCATTGTTACAACCATTGCAAAAT
CATCATTATTTAATAAAAAGTGGTGCATTGGACTGTGCATTCACATGAAGGAAGCAGAAGCAACTGGAGG
ACCCTGTGAAGGAGAAGAATTGTAG

Translation (474 aa):
MGATEVLTSYCVVLCLLQMVALSSGHFTVIGSQRPILATLGGNVELNCQLSPPQQAQHMEIRWFRNRYTQ
PVHLYRNGKNLHGETMSKYVERTELLTDAFNEGKVILRILNVTVDDGGAYHCVFKDGEFYEEHITEVKVT
ATSSDIQILMHTPNIKGVMLECHSGGWFPQPHMEWRNSKGEVIQATSKFHSQDKNKLFNMSMVLFIEASS
HRNVICYFQNLVTHQEQSINIVLSGELFSWKIVWIMILSTISFVMIDFCMTYCVQQQLIHEESLSTVDND
QCESDQSEGTCYKRNYPWIIIAVVPIISVFAIIGVMLFLHLEQRVTILEQHFELDTLWLEDISVILCVVI
VSNINLIPLIYFRLHEHVPRFKDRSPILNKAVVFLHFIYFSIVCGTILLVHLQLRNKVSISDSLFSLYNS
WLTDISMILGFLLSIFIVTTIAKSSLFNKKWCIGLCIHMKEAEATGGPCEGEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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