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Report for CCDS17868.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17868.1 Public Mus musculus 3 Adh5 23 108 98 CCDS HistoryNCBI Gene:11532Re-query CCDS DB by CCDS ID:17868.1Re-query CCDS DB by GeneID:11532See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17868.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005964.6 ENSMUSP00000005964.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005964.6Link to Ensembl Protein Viewer:ENSMUSP00000005964.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000005964Re-query CCDS DB by Protein ID:ENSMUSP00000005964
Original member Current member NCBI NM_007410.3 NP_031436.2 Accepted alive Link to Nucleotide Sequence:NM_007410.3Link to Protein Sequence:NP_031436.2Re-query CCDS DB by Nucleotide ID:NM_007410Re-query CCDS DB by Protein ID:NP_031436Link to BLAST:NP_031436.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031436.2 374 P28474 374 100% 0 0

Chromosomal Locations for CCDS 17868.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 138443182 138443193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138445290 138445391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138447083 138447224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138447852 138447939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138450899 138451118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138451244 138451504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138453742 138453877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138454668 138454806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138455085 138455109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGGCGAACCAGGTGATCAGGTGTAAGGCTGCAGTCGCCTGGGAGGCGGGAAAGCCTCTCTCCATAGAGG
AGATAGAAGTGGCCCCTCCAAAGGCTCATGAAGTTCGGATTAAGATCCTTGCCACTGCTGTTTGCCACAC
CGATGCCTATACCCTGAGCGGAGCTGACCCCGAGGGGTGTTTCCCAGTGATCTTGGGACATGAAGGTGCT
GGAATTGTGGAAAGTGTTGGTGAAGGGGTCACGAAGCTGAAGGCAGGTGACACTGTCATCCCACTCTACA
TCCCACAGTGTGGAGAATGCAAGTTTTGTCTGAATCCTAAAACAAACCTTTGCCAGAAAATAAGGGTCAC
TCAGGGGAAGGGATTAATGCCAGATGGGACTAGCAGATTTACCTGCAAAGGAAAGTCTGTTTTTCACTTC
ATGGGGACTAGCACATTTTCCGAGTACACAGTTGTGGCTGACATCTCTGTTGCTAAAATCGATCCTTCGG
CCCCTTTGGATAAAGTCTGCCTTCTCGGCTGTGGTATTTCAACTGGCTACGGGGCTGCTGTGAACACTGC
CAAGGTGGAGCCTGGTTCTACTTGTGCCGTCTTTGGCCTGGGAGGAGTTGGACTGGCAGTGATCATGGGC
TGTAAGGTGGCTGGTGCATCCCGGATCATTGGTATCGACATCAATAAAGATAAATTCGCAAAGGCCAAAG
AATTTGGAGCCTCTGAATGTATTAGCCCCCAAGACTTCAGTAAATCCATCCAGGAAGTCCTCGTTGAGAT
GACAGATGGGGGCGTGGATTACTCCTTTGAGTGCATTGGCAACGTGAAGGTCATGAGATCAGCCCTTGAG
GCAGCCCACAAAGGCTGGGGTGTCAGTGTGGTAGTGGGAGTAGCTGCTTCAGGGGAAGAAATCTCCACTC
GTCCATTCCAGCTGGTGACAGGACGCACATGGAAAGGCACCGCCTTTGGAGGATGGAAGAGTGTGGAGAG
TGTCCCAAAGCTGGTGTCTGAATATATGTCCAAAAAGATAAAAGTTGACGAATTTGTGACCGGCAATCTC
TCCTTCGACCAAATTAACCAAGCCTTTGATCTGATGCACTCGGGAGACAGCATTCGAACTGTTCTAAAGA
TGTAA

Translation (374 aa):
MANQVIRCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKILATAVCHTDAYTLSGADPEGCFPVILGHEGA
GIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKSVFHF
MGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGAAVNTAKVEPGSTCAVFGLGGVGLAVIMG
CKVAGASRIIGIDINKDKFAKAKEFGASECISPQDFSKSIQEVLVEMTDGGVDYSFECIGNVKVMRSALE
AAHKGWGVSVVVGVAASGEEISTRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTGNL
SFDQINQAFDLMHSGDSIRTVLKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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