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Report for CCDS17289.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17289.2 Public Mus musculus 3 Prkci 23 108 98 CCDS HistoryNCBI Gene:18759Re-query CCDS DB by CCDS ID:17289.2Re-query CCDS DB by GeneID:18759See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 17289.2
The coding region has been updated to extend the N-terminus based on the presence of an upstream translation start codon, which is supported by available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 17289.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108249.8 ENSMUSP00000103884.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108249.8Link to Ensembl Protein Viewer:ENSMUSP00000103884.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108249Re-query CCDS DB by Protein ID:ENSMUSP00000103884
Original member NCBI NM_008857.3 NP_032883.2 Updated not alive Link to Nucleotide Sequence:NM_008857.3Link to Protein Sequence:NP_032883.2Re-query CCDS DB by Nucleotide ID:NM_008857Re-query CCDS DB by Protein ID:NP_032883
Current member NCBI NM_008857.4 NP_032883.2 Accepted alive Link to Nucleotide Sequence:NM_008857.4Link to Protein Sequence:NP_032883.2Re-query CCDS DB by Nucleotide ID:NM_008857Re-query CCDS DB by Protein ID:NP_032883Link to BLAST:NP_032883.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032883.2 595 Q62074 595 100% 0 0

Chromosomal Locations for CCDS 17289.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 30995985 30996085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31018550 31018671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31025130 31025219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31026253 31026303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31029486 31029571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31031084 31031224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31033178 31033229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31034499 31034557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31037846 31038022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31038450 31038547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31039029 31039115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31039368 31039503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31041442 31041529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31043691 31043816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31044882 31044961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31046473 31046562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31046972 31047087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31050190 31050277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1788 nt):
ATGCCGACCCAGAGGGACAGCAGCACCATGTCCCACACGGTCGCGTGCGGCGGCGGCGGGGACCATTCCC
ACCAGGTCCGGGTGAAAGCCTACTACCGCGGGGATATTATGATAACACACTTTGAGCCTTCCATCTCCTT
TGAGGGACTTTGCAGTGAGGTTCGAGATATGTGTTCTTTTGACAATGAGCAGCCGTTCACCATGAAATGG
ATAGATGAGGAAGGAGACCCATGTACAGTGTCTTCTCAGTTGGAGTTAGAAGAGGCTTTCAGGCTGTACG
AGCTGAACAAGGATTCTGAACTCTTGATTCATGTATTTCCATGTGTACCAGAGCGTCCTGGAATGCCTTG
CCCAGGGGAAGACAAGTCCATTTACCGGAGAGGGGCACGCCGGTGGAGAAAGCTGTATTGTGCAAATGGC
CACACTTTTCAAGCCAAACGTTTCAATAGGCGCGCCCACTGTGCCATCTGCACAGACAGAATCTGGGGCC
TCGGACGACAAGGATACAAGTGCATCAACTGCAAACTGCTGGTTCATAAGAAGTGCCACAAGCTGGTCAC
AATTGAGTGTGGGCGGCACTCTTTGCCACCGGAACCCATGATGCCAATGGACCAGACCATGCATCCAGAC
CACACACAGACAGTAATTCCATATAATCCTTCAAGTCATGAGAGTTTGGACCAAGTTGGTGAAGAAAAGG
AGGCAATGAACACCAGGGAGAGTGGTAAAGCGTCGTCCAGTCTAGGTCTGCAGGATTTCGATTTGCTTCG
AGTTATAGGGAGGGGAAGTTACGCCAAAGTACTGTTGGTTCGGTTAAAGAAAACAGATCGCATTTATGCA
ATGAAAGTTGTGAAGAAAGAGCTCGTCAATGACGATGAGGATATCGATTGGGTGCAGACAGAGAAGCATG
TGTTTGAGCAGGCGTCCAATCACCCTTTTCTTGTCGGGCTGCATTCTTGCTTCCAGACAGAAAGCAGGTT
GTTTTTTGTCATAGAATATGTAAATGGAGGGGACCTCATGTTTCATATGCAGCGACAGAGAAAACTTCCT
GAAGAGCATGCCAGGTTTTACTCTGCAGAAATCAGTCTAGCACTGAATTATCTTCATGAGCGAGGGATAA
TTTATAGAGATTTGAAGTTGGACAATGTACTGCTAGACTCTGAAGGACACATTAAACTCACTGACTACGG
CATGTGTAAGGAAGGATTGCGGCCTGGAGACACAACCAGCACTTTCTGCGGCACTCCCAATTACATTGCT
CCAGAGATCTTAAGAGGAGAAGATTATGGCTTCAGCGTTGACTGGTGGGCTCTTGGAGTGCTTATGTTTG
AGATGATGGCGGGAAGGTCTCCGTTTGATATCGTTGGGAGCTCTGACAATCCTGACCAAAACACAGAGGA
TTATCTATTCCAAGTCATTTTGGAAAAGCAGATCCGCATCCCGCGTTCTCTGTCTGTAAAAGCAGCAAGT
GTACTGAAGAGTTTTCTCAACAAGGACCCAAAGGAACGATTGGGTTGTCACCCTCAAACTGGATTTGCTG
ACATTCAAGGACATCCATTCTTCAGAAATGTGGACTGGGACATGATGGAGCAAAAGCAGGTGGTTCCACC
CTTTAAACCAAACATTTCTGGAGAATTTGGTTTGGATAATTTCGATTCTCAGTTTACTAATGAACCAGTC
CAGCTCACTCCAGATGATGATGACATTGTGAGGAAGATTGATCAGTCTGAATTTGAAGGTTTTGAGTATA
TCAACCCCCTCTTGATGTCTGCAGAAGAGTGTGTCTGA

Translation (595 aa):
MPTQRDSSTMSHTVACGGGGDHSHQVRVKAYYRGDIMITHFEPSISFEGLCSEVRDMCSFDNEQPFTMKW
IDEEGDPCTVSSQLELEEAFRLYELNKDSELLIHVFPCVPERPGMPCPGEDKSIYRRGARRWRKLYCANG
HTFQAKRFNRRAHCAICTDRIWGLGRQGYKCINCKLLVHKKCHKLVTIECGRHSLPPEPMMPMDQTMHPD
HTQTVIPYNPSSHESLDQVGEEKEAMNTRESGKASSSLGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYA
MKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLP
EEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIA
PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLSVKAAS
VLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKPNISGEFGLDNFDSQFTNEPV
QLTPDDDDIVRKIDQSEFEGFEYINPLLMSAEECV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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