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Report for CCDS38322.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38322.1 Public Mus musculus 2 Dbndd2 23 108 98 CCDS HistoryNCBI Gene:52840Re-query CCDS DB by CCDS ID:38322.1Re-query CCDS DB by GeneID:52840See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38322.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017878.2 ENSMUSP00000017878.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017878.2Link to Ensembl Protein Viewer:ENSMUSP00000017878.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000017878Re-query CCDS DB by Protein ID:ENSMUSP00000017878
Original member Current member EBI ENSMUST00000069385.14 ENSMUSP00000064437.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069385.14Link to Ensembl Protein Viewer:ENSMUSP00000064437.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000069385Re-query CCDS DB by Protein ID:ENSMUSP00000064437
Original member Current member EBI ENSMUST00000109349.8 ENSMUSP00000104973.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109349.8Link to Ensembl Protein Viewer:ENSMUSP00000104973.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109349Re-query CCDS DB by Protein ID:ENSMUSP00000104973
Original member Current member EBI ENSMUST00000109350.8 ENSMUSP00000104974.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109350.8Link to Ensembl Protein Viewer:ENSMUSP00000104974.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109350Re-query CCDS DB by Protein ID:ENSMUSP00000104974
Original member Current member EBI ENSMUST00000149287.7 ENSMUSP00000128551.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000149287.7Link to Ensembl Protein Viewer:ENSMUSP00000128551.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000149287Re-query CCDS DB by Protein ID:ENSMUSP00000128551
Original member Current member NCBI NM_001048227.1 NP_001041692.1 Accepted alive Link to Nucleotide Sequence:NM_001048227.1Link to Protein Sequence:NP_001041692.1Re-query CCDS DB by Nucleotide ID:NM_001048227Re-query CCDS DB by Protein ID:NP_001041692Link to BLAST:NP_001041692.1
Original member Current member NCBI NM_001048228.1 NP_001041693.1 Accepted alive Link to Nucleotide Sequence:NM_001048228.1Link to Protein Sequence:NP_001041693.1Re-query CCDS DB by Nucleotide ID:NM_001048228Re-query CCDS DB by Protein ID:NP_001041693Link to BLAST:NP_001041693.1
Original member Current member NCBI NM_001048229.1 NP_001041694.1 Accepted alive Link to Nucleotide Sequence:NM_001048229.1Link to Protein Sequence:NP_001041694.1Re-query CCDS DB by Nucleotide ID:NM_001048229Re-query CCDS DB by Protein ID:NP_001041694Link to BLAST:NP_001041694.1
Original member Current member NCBI NM_026797.2 NP_081073.1 Accepted alive Link to Nucleotide Sequence:NM_026797.2Link to Protein Sequence:NP_081073.1Re-query CCDS DB by Nucleotide ID:NM_026797Re-query CCDS DB by Protein ID:NP_081073Link to BLAST:NP_081073.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001041692.1 158 Q9CRD4 158 100% 0 0
NP_001041693.1 158 Q9CRD4 158 100% 0 0
NP_001041694.1 158 Q9CRD4 158 100% 0 0
NP_081073.1 158 Q9CRD4 158 100% 0 0

Chromosomal Locations for CCDS 38322.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164488250 164488388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164488568 164488705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164490136 164490335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGGACCCAAATCCGAGAGCAGCCCTGGAGCGCCAACAGCTGCGGCTCCGGGAGAGGCAGAAGTTCTTTG
AGGACATTTTACAGCCAGAGACAGAGTTTGTCTTCCCCCTGTCCCATCTGCACCTGGAGTCACAAAGACC
CCCCATAGGTAGCATCTCGTCTATGGAAGTGAATGTGGACACACTGGAGCAAGTGGAGTTTATTGATCTT
GCGGATCAGGATGGAGCAGATGTGTTCTTGCCTTGTGAGGAGTCCTCGCCAGCTCCCCAGATGTCTGGAG
TGGATGACCATCCAGAGGAGCTGAGCCTGCTGGTACCCACGTCTGACAGGACCACATCCCGGACCTCCTC
CTTGTCCTCTGACTCCTCCAACCTGCGCAGTCCAAATCCAAGTGATGGGGGAGGAGACACTCCCTTGGCA
CAGTCTGATGAGGAGGACGGGGATGACGGAGGGGCAGAGCCTGGACCCTGCAGCTAG

Translation (158 aa):
MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVEFIDL
ADQDGADVFLPCEESSPAPQMSGVDDHPEELSLLVPTSDRTTSRTSSLSSDSSNLRSPNPSDGGGDTPLA
QSDEEDGDDGGAEPGPCS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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