NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS89536.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89536.1 Public Mus musculus 2 Dph6 23 108 98 CCDS HistoryNCBI Gene:66632Re-query CCDS DB by CCDS ID:89536.1Re-query CCDS DB by GeneID:66632See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89536.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055144.7 ENSMUSP00000060730.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055144.7Link to Ensembl Protein Viewer:ENSMUSP00000060730.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000055144Re-query CCDS DB by Protein ID:ENSMUSP00000060730
Original member Current member NCBI NM_001356438.1 NP_001343367.1 Accepted alive Link to Nucleotide Sequence:NM_001356438.1Link to Protein Sequence:NP_001343367.1Re-query CCDS DB by Nucleotide ID:NM_001356438Re-query CCDS DB by Protein ID:NP_001343367Link to BLAST:NP_001343367.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343367.1 271 Q9CQ28-2 271 100% 0 0

Chromosomal Locations for CCDS 89536.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 114518270 114518292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114519669 114519799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114523044 114523138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114535525 114535586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114567920 114568038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114569477 114569550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114644721 114644914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114647741 114647835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 114654831 114654853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGAGGGTCGCGGCCCTGATCAGTGGTGGGAAGGACAGCTGTTACAACATGATGCAGTGCATTGCTGAGG
GGCATCAAATTGTTGCATTAGCAAATCTAAGACCAGATGAAAACCAAGTGGAGTCAGATGAACTGGATAG
CTATATGTATCAGACAGTGGGTCACCATGCCATTGACTTGTATGCTGAAGCAATGGCGCTGCCCCTGTAT
CGCAGAGCCATCAGAGGAAGGAGCTTGGAGACAGGAAGAGTTTATACGCAATGTGAAGGTGACGAGGTTG
AAGATCTCTATGAACTGTTGAAACTTGTTAAGGAAAAAGAAGAAATCGAAGGGGTATCAGTAGGTGCTAT
ACTCTCTGACTATCAACGTGGACGAGTAGAAAATGTATGTAAACGACTCAATCTCCAGCCTTTAGCTTAT
CTTTGGCAAAGAAACCAGGAAGATTTGCTCCGAGAGATGATAGCTTCTAATATCAAGGCCATTATCATCA
AAGTAGCAGCTTTGGGCTTAGATCCTGATAAGCATCTTGGGAAAACCCTGGTTGAAATGGAGCCTTATCT
TTTAGAGCTTTCTAAGAAGTACGGTGTCCACGTGTGTGGAGAAGGTGGAGAGTATGAGACATTCACGTTG
GACTGCCCTCTATTCAAGAAGAAGATTGTTGTGGACTCTTCAGAAGCAGTCATGCACTCAGCGGATGCAT
TCGCACCTGTGGCTTATCTGCGGCTCTCCCGGCTGCACTTGGAAGAGAAAGTGAGTAAAGCTCAGATGGC
AGAGATTCCAAGGCGAGTGAGAGGTGTCGTCAGTACCTGCGGATGA

Translation (271 aa):
MRVAALISGGKDSCYNMMQCIAEGHQIVALANLRPDENQVESDELDSYMYQTVGHHAIDLYAEAMALPLY
RRAIRGRSLETGRVYTQCEGDEVEDLYELLKLVKEKEEIEGVSVGAILSDYQRGRVENVCKRLNLQPLAY
LWQRNQEDLLREMIASNIKAIIIKVAALGLDPDKHLGKTLVEMEPYLLELSKKYGVHVCGEGGEYETFTL
DCPLFKKKIVVDSSEAVMHSADAFAPVAYLRLSRLHLEEKVSKAQMAEIPRRVRGVVSTCG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH