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Report for CCDS16487.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16487.1 Public Mus musculus 2 Cd59a 23 108 98 CCDS HistoryNCBI Gene:12509Re-query CCDS DB by CCDS ID:16487.1Re-query CCDS DB by GeneID:12509See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16487.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040423.11 ENSMUSP00000048041.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040423.11Link to Ensembl Protein Viewer:ENSMUSP00000048041.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000040423Re-query CCDS DB by Protein ID:ENSMUSP00000048041
Original member Current member EBI ENSMUST00000168176.7 ENSMUSP00000132774.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168176.7Link to Ensembl Protein Viewer:ENSMUSP00000132774.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168176Re-query CCDS DB by Protein ID:ENSMUSP00000132774
Original member NCBI NM_001111060.2 NP_001104530.1 Updated not alive Link to Nucleotide Sequence:NM_001111060.2Link to Protein Sequence:NP_001104530.1Re-query CCDS DB by Nucleotide ID:NM_001111060Re-query CCDS DB by Protein ID:NP_001104530
Current member NCBI NM_001111060.3 NP_001104530.1 Accepted alive Link to Nucleotide Sequence:NM_001111060.3Link to Protein Sequence:NP_001104530.1Re-query CCDS DB by Nucleotide ID:NM_001111060Re-query CCDS DB by Protein ID:NP_001104530Link to BLAST:NP_001104530.1
Original member NCBI NM_007652.5 NP_031678.1 Updated not alive Link to Nucleotide Sequence:NM_007652.5Link to Protein Sequence:NP_031678.1Re-query CCDS DB by Nucleotide ID:NM_007652Re-query CCDS DB by Protein ID:NP_031678
Current member NCBI NM_007652.6 NP_031678.1 Accepted alive Link to Nucleotide Sequence:NM_007652.6Link to Protein Sequence:NP_031678.1Re-query CCDS DB by Nucleotide ID:NM_007652Re-query CCDS DB by Protein ID:NP_031678Link to BLAST:NP_031678.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001104530.1 123 O55186 123 100% 0 0
NP_031678.1 123 O55186 123 100% 0 0

Chromosomal Locations for CCDS 16487.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 104104189 104104249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104110740 104110844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104113975 104114180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (372 nt):
ATGAGAGCTCAGAGGGGACTCATCTTACTCCTGCTGCTTCTGGCTGTGTTCTGTTCCACAGCTGTTAGCC
TCACATGCTACCACTGTTTCCAACCGGTGGTTTCTTCATGCAATATGAACAGCACTTGCTCTCCTGACCA
GGATTCCTGTCTCTATGCTGTAGCCGGAATGCAAGTGTATCAAAGGTGTTGGAAACAATCAGATTGTCAT
GGTGAGATCATTATGGACCAATTAGAAGAGACAAAATTAAAATTCAGATGCTGCCAGTTTAACTTGTGTA
ACAAAAGTGACGGATCCTTGGGGAAGACACCATTGCTGGGGACCTCGGTTCTGGTGGCCATTTTGAATCT
TTGTTTCTTAAGTCATCTCTAA

Translation (123 aa):
MRAQRGLILLLLLLAVFCSTAVSLTCYHCFQPVVSSCNMNSTCSPDQDSCLYAVAGMQVYQRCWKQSDCH
GEIIMDQLEETKLKFRCCQFNLCNKSDGSLGKTPLLGTSVLVAILNLCFLSHL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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