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Report for CCDS16081.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16081.1 Public Mus musculus 2 Scn7a 23 108 98 CCDS HistoryNCBI Gene:20272Re-query CCDS DB by CCDS ID:16081.1Re-query CCDS DB by GeneID:20272See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16081.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042792.6 ENSMUSP00000042405.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042792.6Link to Ensembl Protein Viewer:ENSMUSP00000042405.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000042792Re-query CCDS DB by Protein ID:ENSMUSP00000042405
Original member Current member NCBI NM_009135.2 NP_033161.2 Accepted alive Link to Nucleotide Sequence:NM_009135.2Link to Protein Sequence:NP_033161.2Re-query CCDS DB by Nucleotide ID:NM_009135Re-query CCDS DB by Protein ID:NP_033161Link to BLAST:NP_033161.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033161.2 1681 B1AYL1 1681 100% 0 0

Chromosomal Locations for CCDS 16081.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 66675498 66676561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66680075 66680345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66680864 66680968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66682705 66682842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66683267 66683320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66684015 66684293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66687731 66687838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66689532 66689705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66692506 66692660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66694810 66694915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66697553 66697987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66699843 66700199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66700732 66700902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66703701 66703939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66705016 66705112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66713853 66714059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66726154 66726295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66729012 66729081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66737375 66737581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66741959 66742050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66743703 66743831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66751870 66751959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66752196 66752314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66757121 66757357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5046 nt):
ATGTTGACTTCCCCAGAGCCGAAGGGCCTTGTCCCATTTACAACAGAGTCACTTGAACTTATAGAAAATC
ACATTGCTAAAAAATGCAATGAAGACCCCGAAGAAGAAGAAGGTTTAAAACCAAGTCGTAATCTAGAAGC
TGGCAAAAGACTTCCAATTCCCTATGGAACCCTCCCTCGAGGAACCGTGTCAGAGCCCTTGGAAGATGTG
GATCCATACTACTATGTTAAGAGAAATACTTTCATGGTCTTAAACAGAAGCAGAGTCATCTTCAGGTTCA
ATGCGGTTTCCATCTTCTGCACATTGTCTCCTCTAAACTCCCTCAGAAGAGCAGCTATCAAGGCTTTGGT
GCATCCCCTTTTTCGCCTGCTGATTTTAATCAGCGTTCTCACTGACAGCATACTTATGTGCATGAGTAAT
CTACCAGAATGGATATTGGCAATAGAGAATACTTTGCTTGGGATTTACGCATTTGAAATACTTGTAAAAG
TCATTGCAAGAGGTATCTGGGCAGGTTCATTTTCCTTCCTTGGGGATCTTTGGAACTGGCTTGATTTCAG
TGTAACTTTGTTCGAGCTAATCACAAGGTTTTCACCTCTAAGCTCCTTTTTAATGCTTAAAACTATCAGA
ACTTTCCGAATTTTGAAGATTATCCCTTTGAACCACGGCCTGCAGTCTATTGTGATGACACTGGCCCAGT
GTTTGAAGAAACTATTTGGTGCCATTGCCCTAGCTCTGTTTTTTCTGGCTGTGTTTTCACTACTTGGAAT
GGGCCTCTTCATGGGCAACCTGAAGCACAAATGTCTGCGGTGGCCAGAAGAAAATGAAAATGAAACGCTG
CACAACAGAACTGGAAGCCTTAACTATAGTCCAGAAAGAATAAACTTCTACTACATGGAAGGAGCGAAAT
ATGCTCTCCTTTGCGGCAACAGGACAGATGCTGGCCAGTGTCCGGAAGGTTATGTGTGTGTAAAAGAAGG
CACAAATCCTGACAATGGCTTCACAAGTTTTGACAACTTTGGCTGGTCCCTTCTTGCTATGTTTCGATTG
ATGACACAGGATTACCCTGAATTACTTTATCACCAGATCCTTTATGCTTCAGGAAAGGTCTACATGATAT
TTTTTGTTATGATCAGTTTCTGGTTTGCCTTCTATTTGACAAGTTTGTTCTTGGGCATACTCACTATGAC
CTATGAAAAGGAAAAGCAGAGAGCCTGTGAGGAATCTGGAGGCCTTGATCCCAAATGTCAACAGACAGTG
AAAGAACTCGACGAAGAAAATGACGCAGCTGAGATGGAAACTACACAAATAGAAATGAAGAAAAGATCCC
CAACTTCTATAAACACCACACTGGATATACTGGAAGACACTACCCTCGGACACAGAGAAGAACCAGAAAC
ATCCAGGAAGAAATGCCCAATATGTTGGCATAAGTTTATTAAAACCTGCTTCATCTGGAAATGCTCTCCC
TGTTGGGTAAAACTGAACGAGTTTGCTGATAGAGTTATAACACACCCATTGGCTGATCTTTTTCTTGTCA
TCTGCATCGTTTTAAACATATGCTTCCTCGCCCTAGAACATTTTCCAATGAGCGAGGAGCTCAGGTCTCT
CCTTCACGTTGGAAATTTGGTTTTTATTGGAATTTACACAATAGAAATGATTTTGAAGATAATCGCTATG
CATCCATATGGGTATTTTCAAATAAGCTGGAATATTTTTGACAGTATACTTGTGGTTTTGGAGTTAACAG
AAATTTTACTAGCAGATGTTGAAGGACTAGCTGTTTTAATAACAGTCCCATTGATATTTATAAAACTGGG
GAAGTACGGACCACCATTTAAGAGTTTGATGCGCATCCTTGGTAGCTCATTGATGGCCCTGAAAGATTTG
GTCCTGTTGCTCTGCATATTCGTTTACTTCTCTGCTGTGTTCGGCATGAAGCTGTTTGGTCGAAGTTACA
AGGATTGTGTCTGCCACATAAAGGAAGACTGCCAACCCCAACGCTGGCACATGAGTGACTTCCTTCATGC
CTACATGACCGTGTTCCGAATCCTCTGTGGAGAGTGGATAGAGACATTATGGGAGTGTATGGAGGTTGCA
GGCCAGGCCTGGTGTATTCCTTTTTACATGATGGTCATTTTAATTGGAAACTTATTGATACTTTACCTCT
TTGTGACATTGGTGAGCTCTTTCAGTTACTATGATGCTACATCGGAAGTGAACAAAGAAGCCAAAAACCT
TCAGCTTGCCATGGCAAGGATAAAGTCGGGAATAAACTCCATGCTTCTTAAATTAATGTGCACAGAAAGA
AGTGTTCCTACAGAAGCAACAGACCAAATATGTGATCCAAGTGTTAAAGAGAATATTTCTGGCCATACTC
TTTCTGAACTGAGCAACACCCAAACTTTCCTCAGATATAAGGACCAGAGCAGCAGCACTGAGAAAACTCC
AGTGACTGAATCTGAGAGTCAATCTCTGATTGCTAGTCCCAGTGCCTCTGAAACTGTGCCGATTGCTTCA
GGAGAATCTGATATAGAAAATCTGGATAACAAGGAGACTCGGAGCAAGTCTGGGAATGGAGGCAGTAAAG
AGAAAATGAAGCAGTCTAGCTCATCTGAGTGCAGCACAGTTGATATCGCTATTTCTGAAGAAGAAGAAAT
GGTCTATGAACATGAAAAGTCAAAGCTTCATAAAAATGGTTATGAACGCAAATCTTCAACTGGTCAAATC
AGTAGAGAATCTAGGAATGGAAAGATTTGGAAAAACATCAGGAAAACTTGCTGCAAGATAGTAGAGAACA
GCTGGTTTGAGTGTTTCATTGGCCTGGTCACTCTGCTCTGCACAGGCACTCTGGCTCTTGAAGACATATA
TATTGATCAGAGAAAAACCACTAAAATCTTACTGGAATATGCGGACATGATATTTGCATACATCTTCATT
CTGGAGATGCTTCTCAAGTGGGTGGCTTATGGCTTTAAAGCCTTTTTCTCCAACAACTGGTACAAACTGG
ACTTTATGGTTGTTATCGTGTTTTGTCTTAGCTTAATAGGCAAAACTCGAGAAGATCTGAACCCTCTGAC
ATCAATAAAGTTCCTTCGAGCACTAAGAGTTCTGTCGCAGTTTGAAAGAATGAAGGTGGTCCTGAGAGCT
TTGATAAAAACAACCTTACCCACTGTGAGCGTGTTTCTAGTCTGCCTAATGATCTGGCTGCTTTTCAGTG
TTATTGGAGTGCAGTTATTTGCTGGCAAGTTCTATGAATGCATTGACCCAACAAAGGGAGAAAGATTCCC
TGTATTTGAAGTTATGAATAAAAGTCAGTGTGAAAAACTGTTATTCAATGAATCAATGCCGTGGGAGAAT
GCAAAACTGAACTTTGATAATGTTGGAAATGGTTTTCTTTCTTTACTCCAAGTGGCAACATTTAATGGAT
GGATCAGTATTATGAATTCAGCAATTGATTCTGTTGGTGTAAACATGCAGCCCAGCTTTGAGTACAACCT
CTACATGTATAGTTACTTTATCATCTTTGTTATCTTTGGATTATTTCTTCCTCTCTGTATGCTGATTGGT
GTTATTATTCGCAATTTCAACAAGCAGAAAATTAAGCAGGGAGGATCAAACATCTTTATAACAGTAAAAC
AGAAAAAACAGTACCGGGCCCTGAAGAAGCTCTTGTATGCAGACGTCCAGAAACCAACACCCCGCCCCAG
AAACAAATTCCAAGGCTTCCTTTTTGACCTAGTAACACACCGTGTCTTTAATGTTATCATCATACTTCTT
ATCTGTTTCCAAGCAACAACCATTATGATACAAAAGGATGAGCAGAGTCCACAAATGGAAACTGCCATCT
TCTGGATGAACTCCATTTTTGTCATGCTGTTCACTCTGGAATGCATACTGAAGCTCACTGCCTTCCGTTG
CCACTACTTCACCAGTGCATGGAATGTTCATGACTTTATGGTGGTCATTTTCTCCATTACAGGGCTGCTG
CTACCCTTGACAATAGGACAATACTTTGTGCCTCCTTCCCTGGTGCAGCTGATTCTTCTCTCTCGAGTCA
TCCACATCCTGCGTCCTGGGAAAGGACCGAAGGTGTTCCATGACCTGATGCTTCCCTTGATTCTGGCGCT
CCCAGCATTGCTGAACATTAGTCTTCTCATCTTCCTGGTCATGTTCATCTACGCCATCTTTGGAATGTAC
AACTTTGCCTATGTAAAGAAAGAAGCCGGAATTAATGATGTGTCCAACTTTGAGACCTTTGGAAGCAGTA
TGCTCTGTCTCTTCCAAGTTACAACGTTTTCTGGTTGGGACGGGATGCTGGATGCAATTTTCAACAGTCA
GTGGTCTGACTGCGATCCTGATAAAATTAATCCAGGGACTCAGGTCAAGGGAGATTGTGGGAGCCCTTCT
GTTGGGATTTCTTATTTTGTCAGTTACATCCTCATATCATGGTTGATCATTGTTAACATGTACATTGTGT
TGATCATGGAGTTCTTAAGTATTCCTTCTCAGAAAAAAAGCAGGACCTTGAGTGAAGATGACTTTAGGAG
ATTCTTCCGGGTGTGGAACAGGTTTGACCCTGATAGGACCCAGTACATAGACTCTAGCAAGCTTTCTGAT
TTTGCAGCTGCTCTGGATCCTCCTCTTTTCATGGCAAAACCAAACAAGGGCCAGCTTGTGGCCATGGATC
TCCCCATGGCTGCGGGAGACAGAATCCACTGCCTCGACATTTTACTTGCCTTTACGAAAAGAGTGATGGG
AAAGGATGAGAGGGTGGAGAAAATCCTTTCAGAGATAGAATCCGGGTTCATGTTAGCGAACCCTTTCAAA
ATCACTTATGAGCCGATTACAACTACTTTGAAACGCAAACAAGAGGCAGTTTCAGCAACCATCATCCAGC
GTGCATATAAAAGCTACCGCTTAAGGCAAAATGACAAGAATGTATCAGATACTCCTGCTATAGATGACCG
CAGAGATGATCTTACTTCTAAAGGTGCTCACTCTGGCAAAATCGAGGAGAAGGCATCTATTCAGACCCAG
ATTTAA

Translation (1681 aa):
MLTSPEPKGLVPFTTESLELIENHIAKKCNEDPEEEEGLKPSRNLEAGKRLPIPYGTLPRGTVSEPLEDV
DPYYYVKRNTFMVLNRSRVIFRFNAVSIFCTLSPLNSLRRAAIKALVHPLFRLLILISVLTDSILMCMSN
LPEWILAIENTLLGIYAFEILVKVIARGIWAGSFSFLGDLWNWLDFSVTLFELITRFSPLSSFLMLKTIR
TFRILKIIPLNHGLQSIVMTLAQCLKKLFGAIALALFFLAVFSLLGMGLFMGNLKHKCLRWPEENENETL
HNRTGSLNYSPERINFYYMEGAKYALLCGNRTDAGQCPEGYVCVKEGTNPDNGFTSFDNFGWSLLAMFRL
MTQDYPELLYHQILYASGKVYMIFFVMISFWFAFYLTSLFLGILTMTYEKEKQRACEESGGLDPKCQQTV
KELDEENDAAEMETTQIEMKKRSPTSINTTLDILEDTTLGHREEPETSRKKCPICWHKFIKTCFIWKCSP
CWVKLNEFADRVITHPLADLFLVICIVLNICFLALEHFPMSEELRSLLHVGNLVFIGIYTIEMILKIIAM
HPYGYFQISWNIFDSILVVLELTEILLADVEGLAVLITVPLIFIKLGKYGPPFKSLMRILGSSLMALKDL
VLLLCIFVYFSAVFGMKLFGRSYKDCVCHIKEDCQPQRWHMSDFLHAYMTVFRILCGEWIETLWECMEVA
GQAWCIPFYMMVILIGNLLILYLFVTLVSSFSYYDATSEVNKEAKNLQLAMARIKSGINSMLLKLMCTER
SVPTEATDQICDPSVKENISGHTLSELSNTQTFLRYKDQSSSTEKTPVTESESQSLIASPSASETVPIAS
GESDIENLDNKETRSKSGNGGSKEKMKQSSSSECSTVDIAISEEEEMVYEHEKSKLHKNGYERKSSTGQI
SRESRNGKIWKNIRKTCCKIVENSWFECFIGLVTLLCTGTLALEDIYIDQRKTTKILLEYADMIFAYIFI
LEMLLKWVAYGFKAFFSNNWYKLDFMVVIVFCLSLIGKTREDLNPLTSIKFLRALRVLSQFERMKVVLRA
LIKTTLPTVSVFLVCLMIWLLFSVIGVQLFAGKFYECIDPTKGERFPVFEVMNKSQCEKLLFNESMPWEN
AKLNFDNVGNGFLSLLQVATFNGWISIMNSAIDSVGVNMQPSFEYNLYMYSYFIIFVIFGLFLPLCMLIG
VIIRNFNKQKIKQGGSNIFITVKQKKQYRALKKLLYADVQKPTPRPRNKFQGFLFDLVTHRVFNVIIILL
ICFQATTIMIQKDEQSPQMETAIFWMNSIFVMLFTLECILKLTAFRCHYFTSAWNVHDFMVVIFSITGLL
LPLTIGQYFVPPSLVQLILLSRVIHILRPGKGPKVFHDLMLPLILALPALLNISLLIFLVMFIYAIFGMY
NFAYVKKEAGINDVSNFETFGSSMLCLFQVTTFSGWDGMLDAIFNSQWSDCDPDKINPGTQVKGDCGSPS
VGISYFVSYILISWLIIVNMYIVLIMEFLSIPSQKKSRTLSEDDFRRFFRVWNRFDPDRTQYIDSSKLSD
FAAALDPPLFMAKPNKGQLVAMDLPMAAGDRIHCLDILLAFTKRVMGKDERVEKILSEIESGFMLANPFK
ITYEPITTTLKRKQEAVSATIIQRAYKSYRLRQNDKNVSDTPAIDDRRDDLTSKGAHSGKIEEKASIQTQ
I


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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