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Report for CCDS15892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15892.1 Public Mus musculus 2 BC005624 23 108 98 CCDS HistoryNCBI Gene:227707Re-query CCDS DB by CCDS ID:15892.1Re-query CCDS DB by GeneID:227707See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15892.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028205.9 ENSMUSP00000028205.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028205.9Link to Ensembl Protein Viewer:ENSMUSP00000028205.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000028205Re-query CCDS DB by Protein ID:ENSMUSP00000028205
Original member NCBI NM_144885.2 NP_659134.1 Updated not alive Link to Nucleotide Sequence:NM_144885.2Link to Protein Sequence:NP_659134.1Re-query CCDS DB by Nucleotide ID:NM_144885Re-query CCDS DB by Protein ID:NP_659134
Current member NCBI NM_144885.3 NP_659134.1 Accepted alive Link to Nucleotide Sequence:NM_144885.3Link to Protein Sequence:NP_659134.1Re-query CCDS DB by Nucleotide ID:NM_144885Re-query CCDS DB by Protein ID:NP_659134Link to BLAST:NP_659134.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659134.1 289 Q3TQI7 289 100% 0 0

Chromosomal Locations for CCDS 15892.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 30973210 30973301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30973692 30973790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30973901 30974037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30975891 30976088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30977892 30977969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30978895 30978965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30979999 30980050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30981483 30981542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30981778 30981860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGCGGATTACTGGGAAAACATTCCGCCGGCGCCGGGCTGACTCGGAGTCGGAGGAGGATGAACAAGAAT
CAGAGGAGGTTCGGCTAAAACTGGAAGAAACCCGAGAGGTGCAGAACTTGCGGAAGAGGCCAAATGGGGT
GAGTGCGGCTGCCCTGCTGGTAGGAGAGAAGGTTCAAGAGGAGACTACTCTGGTGGATGATCCTTTCCAA
ATGGCGACAGGGGGCATGGTGGACATGAAGAAACTGAAGGAGCGGGGCAAAGACAAGGTCAGTGAAGAGG
AGGATCTGCACCTGGGGACATCGTTTTCTGCAGAGACCAACCGGAGGGACGAAGATGCAGACATGATGAA
GTACATTGAGACGGAGCTGAAGAAGAGGAAGGGGATTGTGGAGCAAGAGGAACAGAAGGCCAAGCCCAAG
AATGCTGAGGACTGCCTCTATGAGCTGCCAGAGAATATCCGAGTCTCTTCTGCCAAGAAGACTGAGGAGA
TGCTGTCCAACCAGATGCTGAGTGGCATCCCTGAGGTGGACCTGGGCATAGACGCTAAAATAAAAAACAT
CATTTCCACGGAGGATGCCAAGGCCCGGCTGCTGGCAGAGCAGCAGAACAAGAAGAAGGATAGCGAGACA
TCTTTTGTGCCCACCAACATGGCTGTGAACTATGTGCAGCACAACCGATTTTATCACGAGGAGCTCAATG
CACCCATCCGAAGAAACAAAGAAGAGCCCAAAGCCCGGCCCTTGAGAGTGGGTGACACAGAAAAGCCAGA
GCCTGAACGGTCCCCTCCCAACCGCAAGCGTCCTGCTAATGAAAAGGCCACAGATGACTACCACTATGAG
AAGTTCAAGAAGATGAACAGGCGCTACTGA

Translation (289 aa):
MRITGKTFRRRRADSESEEDEQESEEVRLKLEETREVQNLRKRPNGVSAAALLVGEKVQEETTLVDDPFQ
MATGGMVDMKKLKERGKDKVSEEEDLHLGTSFSAETNRRDEDADMMKYIETELKKRKGIVEQEEQKAKPK
NAEDCLYELPENIRVSSAKKTEEMLSNQMLSGIPEVDLGIDAKIKNIISTEDAKARLLAEQQNKKKDSET
SFVPTNMAVNYVQHNRFYHEELNAPIRRNKEEPKARPLRVGDTEKPEPERSPPNRKRPANEKATDDYHYE
KFKKMNRRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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