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Report for CCDS29425.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29425.1 Public Mus musculus 19 Ssh3 23 108 98 CCDS HistoryNCBI Gene:245857Re-query CCDS DB by CCDS ID:29425.1Re-query CCDS DB by GeneID:245857See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29425.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037992.15 ENSMUSP00000047718.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037992.15Link to Ensembl Protein Viewer:ENSMUSP00000047718.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000037992Re-query CCDS DB by Protein ID:ENSMUSP00000047718
Original member Current member NCBI NM_198113.3 NP_932781.1 Accepted alive Link to Nucleotide Sequence:NM_198113.3Link to Protein Sequence:NP_932781.1Re-query CCDS DB by Nucleotide ID:NM_198113Re-query CCDS DB by Protein ID:NP_932781Link to BLAST:NP_932781.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_932781.1 649 Q8K330-1 649 100% 0 0

Chromosomal Locations for CCDS 29425.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4262354 4262632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4263547 4263817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4263908 4264108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4264314 4264460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4265103 4265149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4265292 4265420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4265610 4265703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4265810 4265998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4266107 4266172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4266375 4266446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4266522 4266637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4267747 4267978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4268545 4268585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4269015 4269080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1950 nt):
ATGGCGCTGGTCACAGTGAGTCGCTCGCCGCCGGCAAGTGGCCACTCCACGCCTGTGGGACCCACGCAGG
ACCGAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAGGCAGAGTTTTGCGGTGCTCCGAGGGGCTGTCCT
GGGACTTCAGGATGGAGGGGACAGTAATGTTGCATCTGAGGCTGACTCTGAGCCAATGGAGGAACCCTCA
GGTGAGGAACAGCCCACCGAGGACCAGACTGACAAAGGGCAAGGACTCCAGAGTCCCTGGAAACAAGTGC
AAAAGCGGCACCTGCACCTCATGGTGGAGCTGCTGAGGCCGCAGGATGATATCCGCCTGGCAGCCCAGCT
GGAGGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAG
GCCATCCTGCTTGGGGTGGACTTCCCTGACAGCAGTTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCC
TCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGGGGGCTTCAGTGTGACATCTGGTGGTCAAAGCCG
AATCTTCAAGCCTGTCTCTATCCAGACCATGTGGGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTA
GCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCA
ACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGC
TGAGCCTGGACAGGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTG
GACACCAGTGACCTGGACAGTGTCACTTCTAAAGAGATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTC
CTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTC
TCGCATCTTCCCCCACCTCTACTTGGGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAAC
AGAGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACA
ATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGA
GGATGCCAGAGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACG
GTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCC
GGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG
CCGGCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTGGCGCCTGAAGTT
TCTACACCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAG
GAAGCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTC
CATCAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAAGTTTTCTCT
TCAGATGAAGAGCCTCTTCATCCATTCTCTCAGCTTTCAAGAGCCAAAGGTGGCCAGCGGGTCCGCAAGG
GGCCTTGGCCTGCCCTGAAGTCTCGACAGTCTGTGGTTGCCCTTCATAGTGCTGCCCTGGTGGCCAGCAG
GACACGGGCCTTCCAAGAACAGGGGCAAGGGCAAGAGCAGAGCGAGCCTGGTATGTCTTCTACCCCTAGG
CTCCGGAAGGTGATGAGGCAGGCCAGTGTAGATGACAGCAGGGAGGAGGACAAGGCCTAA

Translation (649 aa):
MALVTVSRSPPASGHSTPVGPTQDRVVRRRGRLQRRQSFAVLRGAVLGLQDGGDSNVASEADSEPMEEPS
GEEQPTEDQTDKGQGLQSPWKQVQKRHLHLMVELLRPQDDIRLAAQLEAARPPRLRYLLVVSTGEELSEE
AILLGVDFPDSSSHSCTLGLVLPLWSDTQVYLDGDGGFSVTSGGQSRIFKPVSIQTMWATLQVLHQACEV
ALGSGLVPGGSALAWATYYQEKLNSDQGCLNEWMAMSDLESFRPPNAEPGQASEQEKMEQAILAELWQVL
DTSDLDSVTSKEIRQALELRLGCPLQQYRDFIDNQMLLLMAQQDRASRIFPHLYLGSEWNAANLEELQKN
RVSHILNMAREIDNFFPERFTYYNVRVWDEESAQLLPHWKETHRFIEDARAQGTRVLVHCKMGVSRSAAT
VLAYAMKQYGWDLEQALIHVQELRPIVRPNHGFLRQLRTYQGILTASRQSHVWEQKVGVVSPEEPLAPEV
STPLPPLPPEPGGSGEVMVMGLEGSQETPKEELGLRPRINLRGVMRSISLLEPSESESTPEAGGLPEVFS
SDEEPLHPFSQLSRAKGGQRVRKGPWPALKSRQSVVALHSAALVASRTRAFQEQGQGQEQSEPGMSSTPR
LRKVMRQASVDDSREEDKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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