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Report for CCDS89300.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89300.1 Public Mus musculus 19 Ssh3 23 108 98 CCDS HistoryNCBI Gene:245857Re-query CCDS DB by CCDS ID:89300.1Re-query CCDS DB by GeneID:245857See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89300.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113852.5 ENSMUSP00000109483.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113852.5Link to Ensembl Protein Viewer:ENSMUSP00000109483.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000113852Re-query CCDS DB by Protein ID:ENSMUSP00000109483
Original member Current member NCBI NM_001356620.1 NP_001343549.1 Accepted alive Link to Nucleotide Sequence:NM_001356620.1Link to Protein Sequence:NP_001343549.1Re-query CCDS DB by Nucleotide ID:NM_001356620Re-query CCDS DB by Protein ID:NP_001343549Link to BLAST:NP_001343549.1

Chromosomal Locations for CCDS 89300.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4262354 4262632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4263547 4263817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4263908 4264108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4264314 4264460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4265103 4265149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4265292 4265420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4265610 4265703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4265810 4265998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4266107 4266172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4266375 4266446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4266522 4266637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4267747 4267978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4268545 4268582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4269015 4269080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGGCGCTGGTCACAGTGAGTCGCTCGCCGCCGGCAAGTGGCCACTCCACGCCTGTGGGACCCACGGACC
GAGTGGTAAGACGCAGAGGCCGGCTCCAGCGCAGGCAGAGTTTTGCGGTGCTCCGAGGGGCTGTCCTGGG
ACTTCAGGATGGAGGGGACAGTAATGTTGCATCTGAGGCTGACTCTGAGCCAATGGAGGAACCCTCAGGT
GAGGAACAGCCCACCGAGGACCAGACTGACAAAGGGCAAGGACTCCAGAGTCCCTGGAAACAAGTGCAAA
AGCGGCACCTGCACCTCATGGTGGAGCTGCTGAGGCCGCAGGATGATATCCGCCTGGCAGCCCAGCTGGA
GGCAGCCCGACCCCCCAGACTTCGCTACCTGCTGGTAGTATCCACGGGAGAAGAACTGAGTGAGGAGGCC
ATCCTGCTTGGGGTGGACTTCCCTGACAGCAGTTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCT
GGAGTGATACCCAGGTGTACCTGGACGGCGATGGGGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAAT
CTTCAAGCCTGTCTCTATCCAGACCATGTGGGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCT
CTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACT
CTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGA
GCCTGGACAGGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTGGAC
ACCAGTGACCTGGACAGTGTCACTTCTAAAGAGATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTC
TCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCG
CATCTTCCCCCACCTCTACTTGGGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAGA
GTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATG
TACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGA
TGCCAGAGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTA
CTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGC
CCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAGCCG
GCAGAGCCACGTCTGGGAGCAGAAAGTGGGTGTGGTCTCCCCAGAGGAGCCCCTGGCGCCTGAAGTTTCT
ACACCATTGCCACCTCTTCCACCAGAACCAGGGGGCAGTGGGGAGGTGATGGTAATGGGCCTGGAAGGAA
GCCAGGAAACCCCAAAAGAAGAACTTGGACTGCGGCCCCGCATCAACCTTCGAGGGGTCATGCGCTCCAT
CAGTCTCCTGGAGCCCTCAGAGTCAGAGAGTACCCCAGAGGCGGGAGGCCTGCCAGAAGTTTTCTCTTCA
GATGAAGAGCCTCTTCATCCATTCTCTCAGCTTTCAAGAGCCAAAGGTGGCCAGCGGGTCCGCAAGGGGC
CTTGGCCTGCCCTGAAGTCTCGACAGTCTGTGGTTGCCCTTCATAGTGCTGCCCTGGTGGCCAGCAGGAC
ACGGGCCTTCCAAGAACAGGGGCAAGGGCAAGAGCAGAGCGAGCCTGGTATGTCTTCTACCCCTAGGCTC
CGGAAGGTGATGAGGCAGGCCAGTGTAGATGACAGCAGGGAGGAGGACAAGGCCTAA

Translation (648 aa):
MALVTVSRSPPASGHSTPVGPTDRVVRRRGRLQRRQSFAVLRGAVLGLQDGGDSNVASEADSEPMEEPSG
EEQPTEDQTDKGQGLQSPWKQVQKRHLHLMVELLRPQDDIRLAAQLEAARPPRLRYLLVVSTGEELSEEA
ILLGVDFPDSSSHSCTLGLVLPLWSDTQVYLDGDGGFSVTSGGQSRIFKPVSIQTMWATLQVLHQACEVA
LGSGLVPGGSALAWATYYQEKLNSDQGCLNEWMAMSDLESFRPPNAEPGQASEQEKMEQAILAELWQVLD
TSDLDSVTSKEIRQALELRLGCPLQQYRDFIDNQMLLLMAQQDRASRIFPHLYLGSEWNAANLEELQKNR
VSHILNMAREIDNFFPERFTYYNVRVWDEESAQLLPHWKETHRFIEDARAQGTRVLVHCKMGVSRSAATV
LAYAMKQYGWDLEQALIHVQELRPIVRPNHGFLRQLRTYQGILTASRQSHVWEQKVGVVSPEEPLAPEVS
TPLPPLPPEPGGSGEVMVMGLEGSQETPKEELGLRPRINLRGVMRSISLLEPSESESTPEAGGLPEVFSS
DEEPLHPFSQLSRAKGGQRVRKGPWPALKSRQSVVALHSAALVASRTRAFQEQGQGQEQSEPGMSSTPRL
RKVMRQASVDDSREEDKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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