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Report for CCDS89165.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89165.1 Public Mus musculus 17 Eml4 23 108 98 CCDS HistoryNCBI Gene:78798Re-query CCDS DB by CCDS ID:89165.1Re-query CCDS DB by GeneID:78798See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89165.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000234460.1 ENSMUSP00000157143.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234460.1Link to Ensembl Protein Viewer:ENSMUSP00000157143.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234460Re-query CCDS DB by Protein ID:ENSMUSP00000157143
Original member Current member NCBI NM_001286567.1 NP_001273496.1 Accepted alive Link to Nucleotide Sequence:NM_001286567.1Link to Protein Sequence:NP_001273496.1Re-query CCDS DB by Nucleotide ID:NM_001286567Re-query CCDS DB by Protein ID:NP_001273496Link to BLAST:NP_001273496.1

Chromosomal Locations for CCDS 89165.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 83405182 83405239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83410026 83410208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83421606 83421735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83427223 83427351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83428000 83428025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83428216 83428248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83440031 83440154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83441296 83441445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83444629 83444698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83445946 83446056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83448160 83448255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83450646 83450780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83450939 83451074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83454401 83454552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83456032 83456157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83456242 83456373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83456995 83457062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83461529 83461617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83463498 83463595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83473046 83473133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83473650 83473748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83477204 83477334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83477706 83478167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2826 nt):
ATGGATTGTAATAGAAGCAAAATGAACAGAGTATCCAGTGATCCAGTGGCTATACCAGATGATAGTATTT
CTGCTGCAAGTACCTCTGACGTTCAAGACCGCCTCTCAGCTCTTGAGTCACGAGTTCAACAACAAGAAGA
TGAAATCACTGTGCTAAAGGCAGCATTGGCTGATGTTTTGAGGCGTCTTGCAATCTCTGAAGATCATGTA
GCCTCAGTGAAAAAGTCCATGCCAAGTAAAGGCCAACCAAGCCTTCGAGAAGCTATTTCTATGTCCTGTA
TAACCAATGGAAGTGGTATAAGCAGAAAACAGAATCATACCAGCTCTGTATCAATAGCAAGAAAAGAAAC
TCTTTCTTCAGCTGCTAAAAGCATAAAACGTCCACCAACAGCTGAAAAGTCACATAACTCATGGGAAAAT
TCAGATGATAGTCGTAATAAATTAATGAAAACGGTTTCAACATCAAAACTAATATCAAAGGTTATAAAAA
ATGCAGACAAACATAAAGATGTCATCGTCAATCAAGCAAAAATGTCAACCCGGGAAAAAAACAGCCAAGA
AGGAGAATATATTAAAATGTTTATGCGAGGTCGGCCAATTACAATGTTCATTCCTTCGGATGTTGACAAC
TATGATGACATCAGAACAGAACTGCCTCCAGAGAAGCTCAAACTGGAGTGGGTATACGGTTATCGAGGAA
AGGACTGTAGAGCGAATGTATACCTGCTTCCCACAGGGGAGATAGTTTATTTTATCGCCTCAGTGGTAGT
CCTGTTTAATTATGAGGAGAGGACTCAGCGACACTACCTGGGTCATACAGACTGTGTGAGATGCCTTGCT
GTACATCCTGACAAGATTAGAATTGCAACTGGACAGATAGCCGGAGTAGACAAAGATGGAAGGCCTCTGC
AACCCCATGTCAGGGTGTGGGATTCAGTAAGTCTTACCACACTGCATGTTATTGGACTTGGAACTTTTGA
GCGTGGAGTAGGATGCCTGGATTTTTCAAAAGCAGATTCAGGTGTTCATTTATGCGTTATTGATGACTCC
AATGAGCACATGCTTACTGTATGGGACTGGCAGAAAAAATCAAAAATCGCAGAAATAAAGACAACAAACG
AAGTTGTTTTGGCTGTAGAATTCCACCCAACAGATGCAAATACAATAATAACATGTGGTAAATCTCATAT
TTTTTTCTGGACCTGGAGTGGCAACTCACTAACAAGAAAACAGGGAATTTTTGGGAAATATGAAAAACCA
AAATTCGTTCAGTGTTTGGCATTCTTGGGGAATGGAGATGTTCTCACTGGAGACTCGGGTGGAGTCATGC
TGATCTGGAGCAAAACGATGGTAGAGCCCCCGCCCGGGAAAGGACCTAAAGGTGTGTATCAGATCAACAG
ACAAATCAAAGCTCATGATGGCAGTGTGTTTACACTTTGTCAGATGAGAAATGGGATGCTATTAACTGGA
GGCGGAAAAGACAGAAAAATAATTTTGTGGGATCATGATCTGAACCTTGAAAGAGAAATAGAGGTTCCTG
ATCAGTATGGCACCATTAGAGCAGTTGCAGAGGGAAGGGCAGAACAGTTCTTAGTAGGCACATCACGAAA
CTTTATTTTACGGGGAACGTTTAATGATGGCTTCCAAATAGAAGTCCAGGGTCATACAGATGAACTCTGG
GGCCTTGCAACACATCCCTTCAAAGATTTGCTCTTGACGTGTGCTCAGGACAGGCAGGTGTGCATGTGGA
ACTCAGTGGAGCACAGGCTGGAGTGGACCAGGCTTGTGGACGAACCAGGACACTGTGCAGACTTTCATCC
AAGCGGTACAGTGGTAGCCATTGGAACGCACTCAGGCAGGTGGTTTGTTCTGGATGCAGAAACAAGAGAT
CTGGTGTCAATCCACACGGATGGCAATGAGCAGCTGTCTGTGATGCGCTACTCAGTAGATGGCACTCTTC
TGGCTGTGGGCTCTCATGACAACTTTATTTACCTCTACACAGTCTTAGAAAACGGAAGAAAATACAGCAG
ATATGGAAAGTGCACTGGACATTCTAGCTACATCACACACCTTGACTGGTCCCCAGACAATAAGCATATA
ATGTCTAACTCGGGTGACTACGAGATACTGTACTGGGACATTGAAAATGGCTGCAAACTAATCAGGAACC
GATCAGATTGCAAGGACATCGATTGGACAACATATACCTGTGTGCTAGGCTTCCAAGTCTTTGGGGTGTG
GCCGGAAGGGTCCGATGGAACAGACATCAACGCACTGGTTCGATCCCACAACAGAAGAGTGATCGCAGTG
GCCGATGATTTCTGCAAAGTTCATCTCTTTCAGTACCCCTGCTCCAAAGCCAAGGCTCCCAGTCACAAGT
ACAGTGCCCACAGCAGCCATGTGACCAACGTCAGTTTTACTCATAATGACAGTCACCTAATTTCAACTGG
TGGGAAGGATATGAGCATCATTCAGTGGAAGCTTGTGGAAAAGTTACCTGTGCCTCAAAACGAGGTCATA
ACAGACGCCAGTGTGACCAAAACCCCTGCCTCTTCCTCTGAAACTGCCAGGCCGTCTAACTCTCCTCCAC
TGCCTCCTTCTCTACCGTTAACTGGGACGGCTGAAGAGGAAAGCAGGATGGGCAGCTCCCCCACACTAGT
GGAGAACAGCCTGGAGCAGATCGCAGAGCCCAGCGAGGAGCAGAGCGAGTGGGGTAGCGAAGACCTTGGT
GTGGTGATTGATGAAGAGCCTGCTAGTGAGTTAAGTGAGACACAGGGAGCAACTGAGCTGCCTGAGGAGG
AGCGAGGCATAACACCCCTGTGCTAA

Translation (941 aa):
MDCNRSKMNRVSSDPVAIPDDSISAASTSDVQDRLSALESRVQQQEDEITVLKAALADVLRRLAISEDHV
ASVKKSMPSKGQPSLREAISMSCITNGSGISRKQNHTSSVSIARKETLSSAAKSIKRPPTAEKSHNSWEN
SDDSRNKLMKTVSTSKLISKVIKNADKHKDVIVNQAKMSTREKNSQEGEYIKMFMRGRPITMFIPSDVDN
YDDIRTELPPEKLKLEWVYGYRGKDCRANVYLLPTGEIVYFIASVVVLFNYEERTQRHYLGHTDCVRCLA
VHPDKIRIATGQIAGVDKDGRPLQPHVRVWDSVSLTTLHVIGLGTFERGVGCLDFSKADSGVHLCVIDDS
NEHMLTVWDWQKKSKIAEIKTTNEVVLAVEFHPTDANTIITCGKSHIFFWTWSGNSLTRKQGIFGKYEKP
KFVQCLAFLGNGDVLTGDSGGVMLIWSKTMVEPPPGKGPKGVYQINRQIKAHDGSVFTLCQMRNGMLLTG
GGKDRKIILWDHDLNLEREIEVPDQYGTIRAVAEGRAEQFLVGTSRNFILRGTFNDGFQIEVQGHTDELW
GLATHPFKDLLLTCAQDRQVCMWNSVEHRLEWTRLVDEPGHCADFHPSGTVVAIGTHSGRWFVLDAETRD
LVSIHTDGNEQLSVMRYSVDGTLLAVGSHDNFIYLYTVLENGRKYSRYGKCTGHSSYITHLDWSPDNKHI
MSNSGDYEILYWDIENGCKLIRNRSDCKDIDWTTYTCVLGFQVFGVWPEGSDGTDINALVRSHNRRVIAV
ADDFCKVHLFQYPCSKAKAPSHKYSAHSSHVTNVSFTHNDSHLISTGGKDMSIIQWKLVEKLPVPQNEVI
TDASVTKTPASSSETARPSNSPPLPPSLPLTGTAEEESRMGSSPTLVENSLEQIAEPSEEQSEWGSEDLG
VVIDEEPASELSETQGATELPEEERGITPLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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