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Report for CCDS37708.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37708.1 Public Mus musculus 17 Eml4 23 108 98 CCDS HistoryNCBI Gene:78798Re-query CCDS DB by CCDS ID:37708.1Re-query CCDS DB by GeneID:78798See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37708.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049503.9 ENSMUSP00000041880.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049503.9Link to Ensembl Protein Viewer:ENSMUSP00000041880.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000049503Re-query CCDS DB by Protein ID:ENSMUSP00000041880
Original member Current member NCBI NM_199466.3 NP_955760.3 Accepted alive Link to Nucleotide Sequence:NM_199466.3Link to Protein Sequence:NP_955760.3Re-query CCDS DB by Nucleotide ID:NM_199466Re-query CCDS DB by Protein ID:NP_955760Link to BLAST:NP_955760.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_955760.3 876 Q3UMY5-4 876 99.8858% 0 1

Chromosomal Locations for CCDS 37708.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 83351215 83351239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83410026 83410208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83421606 83421735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83428000 83428025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83440031 83440154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83441296 83441445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83444629 83444698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83445946 83446056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83448160 83448255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83450646 83450780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83450939 83451074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83454401 83454552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83456032 83456157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83456242 83456373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83456995 83457062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83461529 83461617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83463498 83463595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83473046 83473133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83473650 83473748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83477204 83477334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 83477706 83478167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2631 nt):
ATGGACGGTTTCGCCGGCAGCCTCGATGATAGTATTTCTGCTGCAAGTACCTCTGACGTTCAAGACCGCC
TCTCAGCTCTTGAGTCACGAGTTCAACAACAAGAAGATGAAATCACTGTGCTAAAGGCAGCATTGGCTGA
TGTTTTGAGGCGTCTTGCAATCTCTGAAGATCATGTAGCCTCAGTGAAAAAGTCCATGCCAAGTAAAGGC
CAACCAAGCCTTCGAGAAGCTATTTCTATGTCCTGTATAACCAATGGAAGTGGTATAAGCAGAAAACAGA
ATCATACCAGCTCTGTATCAATAGCAAGAAAAGAAACTCTTTCTTCAGCTGCTAAAAGACATAAAGATGT
CATCGTCAATCAAGAAGGAGAATATATTAAAATGTTTATGCGAGGTCGGCCAATTACAATGTTCATTCCT
TCGGATGTTGACAACTATGATGACATCAGAACAGAACTGCCTCCAGAGAAGCTCAAACTGGAGTGGGTAT
ACGGTTATCGAGGAAAGGACTGTAGAGCGAATGTATACCTGCTTCCCACAGGGGAGATAGTTTATTTTAT
CGCCTCAGTGGTAGTCCTGTTTAATTATGAGGAGAGGACTCAGCGACACTACCTGGGTCATACAGACTGT
GTGAGATGCCTTGCTGTACATCCTGACAAGATTAGAATTGCAACTGGACAGATAGCCGGAGTAGACAAAG
ATGGAAGGCCTCTGCAACCCCATGTCAGGGTGTGGGATTCAGTAAGTCTTACCACACTGCATGTTATTGG
ACTTGGAACTTTTGAGCGTGGAGTAGGATGCCTGGATTTTTCAAAAGCAGATTCAGGTGTTCATTTATGC
GTTATTGATGACTCCAATGAGCACATGCTTACTGTATGGGACTGGCAGAAAAAATCAAAAATCGCAGAAA
TAAAGACAACAAACGAAGTTGTTTTGGCTGTAGAATTCCACCCAACAGATGCAAATACAATAATAACATG
TGGTAAATCTCATATTTTTTTCTGGACCTGGAGTGGCAACTCACTAACAAGAAAACAGGGAATTTTTGGG
AAATATGAAAAACCAAAATTCGTTCAGTGTTTGGCATTCTTGGGGAATGGAGATGTTCTCACTGGAGACT
CGGGTGGAGTCATGCTGATCTGGAGCAAAACGATGGTAGAGCCCCCGCCCGGGAAAGGACCTAAAGGTGT
GTATCAGATCAACAGACAAATCAAAGCTCATGATGGCAGTGTGTTTACACTTTGTCAGATGAGAAATGGG
ATGCTATTAACTGGAGGCGGAAAAGACAGAAAAATAATTTTGTGGGATCATGATCTGAACCTTGAAAGAG
AAATAGAGGTTCCTGATCAGTATGGCACCATTAGAGCAGTTGCAGAGGGAAGGGCAGAACAGTTCTTAGT
AGGCACATCACGAAACTTTATTTTACGGGGAACGTTTAATGATGGCTTCCAAATAGAAGTCCAGGGTCAT
ACAGATGAACTCTGGGGCCTTGCAACACATCCCTTCAAAGATTTGCTCTTGACGTGTGCTCAGGACAGGC
AGGTGTGCATGTGGAACTCAGTGGAGCACAGGCTGGAGTGGACCAGGCTTGTGGACGAACCAGGACACTG
TGCAGACTTTCATCCAAGCGGTACAGTGGTAGCCATTGGAACGCACTCAGGCAGGTGGTTTGTTCTGGAT
GCAGAAACAAGAGATCTGGTGTCAATCCACACGGATGGCAATGAGCAGCTGTCTGTGATGCGCTACTCAG
TAGATGGCACTCTTCTGGCTGTGGGCTCTCATGACAACTTTATTTACCTCTACACAGTCTTAGAAAACGG
AAGAAAATACAGCAGATATGGAAAGTGCACTGGACATTCTAGCTACATCACACACCTTGACTGGTCCCCA
GACAATAAGCATATAATGTCTAACTCGGGTGACTACGAGATACTGTACTGGGACATTGAAAATGGCTGCA
AACTAATCAGGAACCGATCAGATTGCAAGGACATCGATTGGACAACATATACCTGTGTGCTAGGCTTCCA
AGTCTTTGGGGTGTGGCCGGAAGGGTCCGATGGAACAGACATCAACGCACTGGTTCGATCCCACAACAGA
AGAGTGATCGCAGTGGCCGATGATTTCTGCAAAGTTCATCTCTTTCAGTACCCCTGCTCCAAAGCCAAGG
CTCCCAGTCACAAGTACAGTGCCCACAGCAGCCATGTGACCAACGTCAGTTTTACTCATAATGACAGTCA
CCTAATTTCAACTGGTGGGAAGGATATGAGCATCATTCAGTGGAAGCTTGTGGAAAAGTTACCTGTGCCT
CAAAACGAGGTCATAACAGACGCCAGTGTGACCAAAACCCCTGCCTCTTCCTCTGAAACTGCCAGGCCGT
CTAACTCTCCTCCACTGCCTCCTTCTCTACCGTTAACTGGGACGGCTGAAGAGGAAAGCAGGATGGGCAG
CTCCCCCACACTAGTGGAGAACAGCCTGGAGCAGATCGCAGAGCCCAGCGAGGAGCAGAGCGAGTGGGGT
AGCGAAGACCTTGGTGTGGTGATTGATGAAGAGCCTGCTAGTGAGTTAAGTGAGACACAGGGAGCAACTG
AGCTGCCTGAGGAGGAGCGAGGCATAACACCCCTGTGCTAA

Translation (876 aa):
MDGFAGSLDDSISAASTSDVQDRLSALESRVQQQEDEITVLKAALADVLRRLAISEDHVASVKKSMPSKG
QPSLREAISMSCITNGSGISRKQNHTSSVSIARKETLSSAAKRHKDVIVNQEGEYIKMFMRGRPITMFIP
SDVDNYDDIRTELPPEKLKLEWVYGYRGKDCRANVYLLPTGEIVYFIASVVVLFNYEERTQRHYLGHTDC
VRCLAVHPDKIRIATGQIAGVDKDGRPLQPHVRVWDSVSLTTLHVIGLGTFERGVGCLDFSKADSGVHLC
VIDDSNEHMLTVWDWQKKSKIAEIKTTNEVVLAVEFHPTDANTIITCGKSHIFFWTWSGNSLTRKQGIFG
KYEKPKFVQCLAFLGNGDVLTGDSGGVMLIWSKTMVEPPPGKGPKGVYQINRQIKAHDGSVFTLCQMRNG
MLLTGGGKDRKIILWDHDLNLEREIEVPDQYGTIRAVAEGRAEQFLVGTSRNFILRGTFNDGFQIEVQGH
TDELWGLATHPFKDLLLTCAQDRQVCMWNSVEHRLEWTRLVDEPGHCADFHPSGTVVAIGTHSGRWFVLD
AETRDLVSIHTDGNEQLSVMRYSVDGTLLAVGSHDNFIYLYTVLENGRKYSRYGKCTGHSSYITHLDWSP
DNKHIMSNSGDYEILYWDIENGCKLIRNRSDCKDIDWTTYTCVLGFQVFGVWPEGSDGTDINALVRSHNR
RVIAVADDFCKVHLFQYPCSKAKAPSHKYSAHSSHVTNVSFTHNDSHLISTGGKDMSIIQWKLVEKLPVP
QNEVITDASVTKTPASSSETARPSNSPPLPPSLPLTGTAEEESRMGSSPTLVENSLEQIAEPSEEQSEWG
SEDLGVVIDEEPASELSETQGATELPEEERGITPLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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