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Report for CCDS57088.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57088.1 Public Mus musculus 17 Esp18 23 108 98 CCDS HistoryNCBI Gene:100126774Re-query CCDS DB by CCDS ID:57088.1Re-query CCDS DB by GeneID:100126774See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57088.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179848.1 ENSMUSP00000135980.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179848.1Link to Ensembl Protein Viewer:ENSMUSP00000135980.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179848Re-query CCDS DB by Protein ID:ENSMUSP00000135980
Original member Current member NCBI NM_001244763.1 NP_001231692.1 Accepted alive Link to Nucleotide Sequence:NM_001244763.1Link to Protein Sequence:NP_001231692.1Re-query CCDS DB by Nucleotide ID:NM_001244763Re-query CCDS DB by Protein ID:NP_001231692Link to BLAST:NP_001231692.1

Chromosomal Locations for CCDS 57088.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 39408112 39408180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39409935 39410141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (276 nt):
ATGGCTTCATTCCCACTGATGTTTTTCCTCATCATTCTGGTGTATCAAACAATACTTCCTGAAGGAAGGG
CAGTGAAATGGACTGAGAAAGAACCCGAGATATCTGCTGATCTGAAAGATGACTTCAAAATACCTCTTTG
CCAAACTATAAGAAATAACATAGATGTTTGCTGGTTGTCAATTGGCTCCGACAAAGACAAACCATTGTTT
TTAGGATTCATAATTAATTTTGAACAACGTTGGATTAATGTACTGCCTCGAATAAAGTTTAACTAG

Translation (91 aa):
MASFPLMFFLIILVYQTILPEGRAVKWTEKEPEISADLKDDFKIPLCQTIRNNIDVCWLSIGSDKDKPLF
LGFIINFEQRWINVLPRIKFN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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