NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28719.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28719.1 Public Mus musculus 17 Rpp21 23 108 98 CCDS HistoryNCBI Gene:67676Re-query CCDS DB by CCDS ID:28719.1Re-query CCDS DB by GeneID:67676See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28719.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025319.6 ENSMUSP00000025319.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025319.6Link to Ensembl Protein Viewer:ENSMUSP00000025319.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025319Re-query CCDS DB by Protein ID:ENSMUSP00000025319
Original member Current member NCBI NM_026308.2 NP_080584.1 Accepted alive Link to Nucleotide Sequence:NM_026308.2Link to Protein Sequence:NP_080584.1Re-query CCDS DB by Nucleotide ID:NM_026308Re-query CCDS DB by Protein ID:NP_080584Link to BLAST:NP_080584.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080584.1 150 Q8R040 150 100% 0 0

Chromosomal Locations for CCDS 28719.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 36255713 36255798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36255944 36256069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36257442 36257524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36257606 36257706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36257783 36257839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (453 nt):
ATGGCGGGCCCAGTGAAGGACCGGGAAGCCTTCCAGAGACTCAGCTTCCTGTACCAGGCTGCACACTGCG
TCCTCTCTCAGAACCCCGAGAACCAGGCGCTGGCTAGGTTTTACTGCCACACAGAGAAAACCATCGCGAA
GCGGCTGGTCCTCCGGCAGGACCCCTCTGTGAAGAGGACGCTCTGTCGCAGCTGCTCCTCTCTCCTCATT
CCGGGCCTCACCTGCACGCAGCGCCAGAGACGCCGAAAGGGACAGCGCTGGACAGTACAGACCTGTCTGA
CATGCCAGCGGAGCCAGAGATTCCTCAACGACCCTAAGCATCTGCTCTGGGGTGACCGGCCTGAAGCCCA
GCTGGAAAATCAGGCAGACATCAATCCATCAGAGCCCCTGCCAAACATAGCTGACCTCCCCAAAGAGAAC
ATTCAGACTCAGGCTTTGAACACCAGTGAATGA

Translation (150 aa):
MAGPVKDREAFQRLSFLYQAAHCVLSQNPENQALARFYCHTEKTIAKRLVLRQDPSVKRTLCRSCSSLLI
PGLTCTQRQRRRKGQRWTVQTCLTCQRSQRFLNDPKHLLWGDRPEAQLENQADINPSEPLPNIADLPKEN
IQTQALNTSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH