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Report for CCDS37557.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37557.1 Public Mus musculus 17 Pglyrp2 23 108 98 CCDS HistoryNCBI Gene:57757Re-query CCDS DB by CCDS ID:37557.1Re-query CCDS DB by GeneID:57757See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37557.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170392.8 ENSMUSP00000129964.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170392.8Link to Ensembl Protein Viewer:ENSMUSP00000129964.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170392Re-query CCDS DB by Protein ID:ENSMUSP00000129964
Original member Current member EBI ENSMUST00000236386.1 ENSMUSP00000158365.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236386.1Link to Ensembl Protein Viewer:ENSMUSP00000158365.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236386Re-query CCDS DB by Protein ID:ENSMUSP00000158365
Original member Current member NCBI NM_001271476.1 NP_001258405.1 Accepted alive Link to Nucleotide Sequence:NM_001271476.1Link to Protein Sequence:NP_001258405.1Re-query CCDS DB by Nucleotide ID:NM_001271476Re-query CCDS DB by Protein ID:NP_001258405Link to BLAST:NP_001258405.1
Original member Current member NCBI NM_021319.5 NP_067294.2 Accepted alive Link to Nucleotide Sequence:NM_021319.5Link to Protein Sequence:NP_067294.2Re-query CCDS DB by Nucleotide ID:NM_021319Re-query CCDS DB by Protein ID:NP_067294Link to BLAST:NP_067294.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258405.1 530 Q8VCS0-1 530 100% 0 0
NP_067294.2 530 Q8VCS0-1 530 100% 0 0

Chromosomal Locations for CCDS 37557.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 32413463 32413474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32415806 32416103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32416878 32417088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32417981 32418988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 32420800 32420863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGAAGGCCTGGGGTGCCCTCTGGATCGTGCTTGGATTGCTGCTGTGGCCAGAGCCAGGGGCAGCCTCCT
CCTTGCCTCTGCTCATGGACTCCATCATCCAGGCCCTTGCTGAACTTGAGCAAAAGGTACCAGTGACTGA
GGCCAGCATCACTGCCTCTGCATGGATTCTGTCAGCCAAGAACTCCAGCACCCACAATTCCCTTCACCAG
CGCTTGCTGCTGAAGGCACCAAGCCACAACACTACAGAGCCAGATCCTCACTCTCTCAGCCCGGAGCTTC
AAGCACTGATTTCTGAGGTGGCTCAACACGATGTACAGAATGGGCGGGAATATGGAGTGGTGCTGGCACC
TGATGGCTCCACCGTAGCTGTGAAGCCTCTGCTGTTTGGGCTAGAGGCCGGTCTACAGGCACACAGCGTT
GCTAACTTGCCTTCAGATTGTCTGGCTATCCCCTGTGATACTGGAGACACCTTGGCCAATATTAGAGCCA
CCTGGCCAGGACTCATGGATGCTTTTCCAAATGCCTCTTCTCCAGATGTTGGAGCCACTTTACCAAACGA
CAAAGCCAAGACTCCCACCACTGTGGACAGACTCCTGGCAATCACCTTGGCTGGTGACTTAGGTCTGACC
TTCCTCCACAGGTCCCAGACTTGGAGTCCTCCAGGACTGGGAACTGAGGGCTGCTGGGACCAGCTTACTG
CCCCCAGGGTCTTCACACTGTTGGACCCCCAGGCATCCAGGCTCACCATGGCTTTCCTCAATGGTGCCTT
AGATGGAGCTCTCCTTGGGAACCACTTGAGCCAAATCCCTAGGCCCCACCCACCCCTCAGCCACCTGCTA
AGAGAGTACTATGGAGCTGGGGTGAATGGAGATCCGGTGTTCCGAAGTAACTTCCGAAGGCAGAACGGTG
CTGCTTTGACTTCAGCCCCTACCCTGGCCCAGCAGGTATGGGAGGCCCTTGTCCTGTTACAGAAACTGGA
GCCAGAACACCTACAGTTGCAGAACATTAGCCAAGAGCAGCTGGCTCAGGTAGCCACCTTGGCTACCAAG
GAGTTCACTGAGGCTTTCCTGGGATGCCCAGCCATTCACCCCCGCTGCCGTTGGGGAGCGGCTCCCTACC
GAGGCCACCCAACACCACTCCGGCTGCCACTTGGATTCTTATATGTGCATCACACATACGTGCCAGCGCC
ACCCTGCACCACCTTCCAGAGCTGCGCCGCCGATATGCGCTCCATGCAGCGTTTCCACCAGGATGTGCGC
AAGTGGGATGACATCGGCTACAGTTTCGTGGTAGGCTCCGACGGCTATCTGTACCAGGGCCGTGGCTGGC
ACTGGGTAGGTGCGCACACACGCGGCTACAACTCCCGCGGCTTCGGTGTGGCCTTCGTGGGCAACTACAC
TGGGTCACTGCCCAACGAAGCTGCGCTGAACACGGTGCGCGACGCGCTCCCGAGCTGCGCAATTCGCGCA
GGTCTCTTGCGGCCAGACTACAAGCTGCTTGGCCACCGCCAGCTAGTGCTCACCCACTGCCCCGGGAACG
CGCTCTTCAACTTGCTGCGCACCTGGCCTCACTTCACAGAGGTTGAAAACTAA

Translation (530 aa):
MKAWGALWIVLGLLLWPEPGAASSLPLLMDSIIQALAELEQKVPVTEASITASAWILSAKNSSTHNSLHQ
RLLLKAPSHNTTEPDPHSLSPELQALISEVAQHDVQNGREYGVVLAPDGSTVAVKPLLFGLEAGLQAHSV
ANLPSDCLAIPCDTGDTLANIRATWPGLMDAFPNASSPDVGATLPNDKAKTPTTVDRLLAITLAGDLGLT
FLHRSQTWSPPGLGTEGCWDQLTAPRVFTLLDPQASRLTMAFLNGALDGALLGNHLSQIPRPHPPLSHLL
REYYGAGVNGDPVFRSNFRRQNGAALTSAPTLAQQVWEALVLLQKLEPEHLQLQNISQEQLAQVATLATK
EFTEAFLGCPAIHPRCRWGAAPYRGHPTPLRLPLGFLYVHHTYVPAPPCTTFQSCAADMRSMQRFHQDVR
KWDDIGYSFVVGSDGYLYQGRGWHWVGAHTRGYNSRGFGVAFVGNYTGSLPNEAALNTVRDALPSCAIRA
GLLRPDYKLLGHRQLVLTHCPGNALFNLLRTWPHFTEVEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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