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Report for CCDS49842.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49842.1 Public Mus musculus 16 Slc15a2 23 108 98 CCDS HistoryNCBI Gene:57738Re-query CCDS DB by CCDS ID:49842.1Re-query CCDS DB by GeneID:57738See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49842.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164579.7 ENSMUSP00000132029.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164579.7Link to Ensembl Protein Viewer:ENSMUSP00000132029.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164579Re-query CCDS DB by Protein ID:ENSMUSP00000132029
Original member NCBI NM_001145899.1 NP_001139371.1 Updated not alive Link to Nucleotide Sequence:NM_001145899.1Link to Protein Sequence:NP_001139371.1Re-query CCDS DB by Nucleotide ID:NM_001145899Re-query CCDS DB by Protein ID:NP_001139371
Current member NCBI NM_001145899.2 NP_001139371.2 Accepted alive Link to Nucleotide Sequence:NM_001145899.2Link to Protein Sequence:NP_001139371.2Re-query CCDS DB by Nucleotide ID:NM_001145899Re-query CCDS DB by Protein ID:NP_001139371Link to BLAST:NP_001139371.2

Chromosomal Locations for CCDS 49842.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 36772014 36772141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36772422 36772512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36774542 36774641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36775598 36775690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36781566 36781707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36782272 36782359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36784655 36784792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (780 nt):
ATGCTTGAGGAGAGAGAGAGTAAGGAGCCAGCCATGAATCCTTTCCAGAAAAATGAGTCCAAGGAAACGC
TCTTTTCACCTGTCTCTACTGAAGAGATGCTGCCTGGACCTCCAAGCCCTCCAAAGAAGTCAACTCCGAA
GCTCTTCGGCTCTAGCTACCCACTCAGCATCGCCTTCATTGTGGTGAACGAATTCTGCGAGCGATTTTCC
TATTATGGCATGAAAGCTGTGTTGACCTTGTATTTCCTGTACTTCCTGCACTGGAATGAAGACACGTCCA
CATCTGTCTACCATGCCTTCAGCAGCCTCTGCTATTTCACCCCCATCTTGGGAGCAGCGATTGCTGACTC
CTGGCTGGGAAAATTCAAGACAATCATCTATCTGTCCCTGGTGTATGTTCTTGGCCATGTATTCAAGTCT
TTGGGTGCCATACCAATACTGGGAGGAAAAATGCTACATACAATCTTATCATTGGTTGGCCTGAGTCTCA
TAGCTCTGGGAACAGGAGGTATCAAACCCTGTGTGGCAGCTTTTGGCGGAGACCAGTTTGAAGAGGAACA
TGCAGAGGCACGGACTAGATACTTCTCGGTCTTCTACCTCTCCATCAATGCAGGGAGCTTGATTTCTATG
TTCATCACACCCATGCTAAGAGGGGATGTGAAGTGTTTTGGCGAAGACTGCTATGCATTGGCTTTTGGGA
TTCCAGGATTGCTCATGGTGCTGGCACTTGGTGAGTGGAGTGGAAAAGGATGTGAACAGCCGTTGATCCC
TGCCACATAG

Translation (259 aa):
MLEERESKEPAMNPFQKNESKETLFSPVSTEEMLPGPPSPPKKSTPKLFGSSYPLSIAFIVVNEFCERFS
YYGMKAVLTLYFLYFLHWNEDTSTSVYHAFSSLCYFTPILGAAIADSWLGKFKTIIYLSLVYVLGHVFKS
LGAIPILGGKMLHTILSLVGLSLIALGTGGIKPCVAAFGGDQFEEEHAEARTRYFSVFYLSINAGSLISM
FITPMLRGDVKCFGEDCYALAFGIPGLLMVLALGEWSGKGCEQPLIPAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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