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Report for CCDS37300.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37300.1 Public Mus musculus 16 Fetub 23 108 98 CCDS HistoryNCBI Gene:59083Re-query CCDS DB by CCDS ID:37300.1Re-query CCDS DB by GeneID:59083See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 37300.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023587.11 ENSMUSP00000023587.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023587.11Link to Ensembl Protein Viewer:ENSMUSP00000023587.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000023587Re-query CCDS DB by Protein ID:ENSMUSP00000023587
Original member Current member EBI ENSMUST00000167399.1 ENSMUSP00000128745.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167399.1Link to Ensembl Protein Viewer:ENSMUSP00000128745.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167399Re-query CCDS DB by Protein ID:ENSMUSP00000128745
Original member Current member EBI ENSMUST00000170805.8 ENSMUSP00000128989.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170805.8Link to Ensembl Protein Viewer:ENSMUSP00000128989.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170805Re-query CCDS DB by Protein ID:ENSMUSP00000128989
Original member Current member EBI ENSMUST00000232097.1 ENSMUSP00000155898.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232097.1Link to Ensembl Protein Viewer:ENSMUSP00000155898.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232097Re-query CCDS DB by Protein ID:ENSMUSP00000155898
Original member Current member EBI ENSMUST00000231768.1 ENSMUSP00000156347.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231768.1Link to Ensembl Protein Viewer:ENSMUSP00000156347.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231768Re-query CCDS DB by Protein ID:ENSMUSP00000156347
Original member Current member NCBI NM_001083905.1 NP_001077374.1 Accepted alive Link to Nucleotide Sequence:NM_001083905.1Link to Protein Sequence:NP_001077374.1Re-query CCDS DB by Nucleotide ID:NM_001083905Re-query CCDS DB by Protein ID:NP_001077374Link to BLAST:NP_001077374.1
Original member Current member NCBI NM_021564.2 NP_067539.1 Accepted alive Link to Nucleotide Sequence:NM_021564.2Link to Protein Sequence:NP_067539.1Re-query CCDS DB by Nucleotide ID:NM_021564Re-query CCDS DB by Protein ID:NP_067539Link to BLAST:NP_067539.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077374.1 388 Q9QXC1 388 100% 0 0
NP_067539.1 388 Q9QXC1 388 100% 0 0

Chromosomal Locations for CCDS 37300.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 22929076 22929309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22929633 22929743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22932250 22932337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22934233 22934396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22935642 22935740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22937847 22937957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22939276 22939635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGGGCCTGCTCCGACTTCTGGTGCTCTGCACCCTGGCTGCATGCTGCATGGCCCGCTCTCCCCCAGCCC
CACCCCTGCCACAACGCCCCCTCTCACCTCTGCATCCTCTGGGCTGTAACGACTCTGAAGTGCTGGCAGT
TGCAGGATTTGCCCTGCAGAACATCAACAGAGACCAAAAGGATGGCTATATGTTGAGCCTTAACAGAGTG
CATGATGTTCGGGAGCACTACCAGGAAGACATGGGATCTCTGTTCTACCTCACATTGGATGTCTTAGAGA
CTGACTGCCACGTGCTCAGCAGGAAGGCACAGAAGGACTGCAAACCGAGGATGTTCTATGAGTCGGTTTA
TGGCCAGTGCAAAGCAATGTTTCACATTAACAAGCCAAGAAGAGTTCTCTACTTACCTGCTTATAACTGT
ACACTTCGCCCAGTTTCCAAAAGAAAGACTCATACAACGTGCCCTGACTGCCCTAGCCCCATTGACTTGT
CAAACCCCAGTGCTCTGGAAGCTGCCACGGAGTCGCTTGCAAAGTTCAACAGTAAGAGCCCCTCAAAAAA
GTATGAACTCGTCAAAGTCACCAAGGCTATGAACCAGTGGGTGTCTGGCCCTGCTTACTATGTGGAATAT
TTGATCAAAGAGGCACCATGTACCAAATCCCAGGCCAGCTGTTCGCTCCAGCACTCTGACTCTGAGCCCG
TTGGTATTTGCCAAGGTTCTACGGTCCAAAGTTCTCTGAGGCACGTTCCTCTGATCCAACCCGTAGAAAA
GTCTGTCACTGTGACTTGTGAGTTCTTCGAATCTCAGGCTCAGGTCCCTGGAGATGAGAACCCTGCTGTT
ACCCAGGGCCCTCAGAAACTCCCTCAGAAAAACACGGCCCCTACCAGCTCCCCCTCCGTAACTGCACCAA
GAGGATCCATCCAGCACCTCCCCGAACTGGATGATGAGAAGCCCGAGGAGTCCAAGGGAGGGAGCCCTGA
GGAAGCCTTTCCTGTGCAGCTGGATCTAACCACCAATCCCCAGGGGGACACACTAGATGTCTCCTTCCTG
TACCTGGAGCCTGGGGACAAGAAGCTGGTGGTGCTGCCTTTCCCTGGAAAGGAACAGCGCTCCGCCGAGT
GCCCAGGGCCCGAGAAGGAGAACAACCCTCTGGTTCTCCCACCCTGA

Translation (388 aa):
MGLLRLLVLCTLAACCMARSPPAPPLPQRPLSPLHPLGCNDSEVLAVAGFALQNINRDQKDGYMLSLNRV
HDVREHYQEDMGSLFYLTLDVLETDCHVLSRKAQKDCKPRMFYESVYGQCKAMFHINKPRRVLYLPAYNC
TLRPVSKRKTHTTCPDCPSPIDLSNPSALEAATESLAKFNSKSPSKKYELVKVTKAMNQWVSGPAYYVEY
LIKEAPCTKSQASCSLQHSDSEPVGICQGSTVQSSLRHVPLIQPVEKSVTVTCEFFESQAQVPGDENPAV
TQGPQKLPQKNTAPTSSPSVTAPRGSIQHLPELDDEKPEESKGGSPEEAFPVQLDLTTNPQGDTLDVSFL
YLEPGDKKLVVLPFPGKEQRSAECPGPEKENNPLVLPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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