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Report for CCDS27028.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27028.1 Public Mus musculus 14 Pip4p1 23 108 98 CCDS HistoryNCBI Gene:219024Re-query CCDS DB by CCDS ID:27028.1Re-query CCDS DB by GeneID:219024See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27028.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160835.8 ENSMUSP00000124782.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160835.8Link to Ensembl Protein Viewer:ENSMUSP00000124782.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160835Re-query CCDS DB by Protein ID:ENSMUSP00000124782
Original member Current member NCBI NM_001033271.5 NP_001028443.1 Accepted alive Link to Nucleotide Sequence:NM_001033271.5Link to Protein Sequence:NP_001028443.1Re-query CCDS DB by Nucleotide ID:NM_001033271Re-query CCDS DB by Protein ID:NP_001028443Link to BLAST:NP_001028443.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028443.1 284 Q3TWL2 284 100% 0 0

Chromosomal Locations for CCDS 27028.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 50927894 50928037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50928821 50928911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50929006 50929058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50929202 50929307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50929584 50929690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50930134 50930324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50930613 50930775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (855 nt):
ATGGCGGCAGACGGAGAGCGCTCCCCGCTGCTCTCCGAGGCCGGCGATGGCGGCGCTGGTGGCAACGGCT
TAGCGGGCCCGGGCGGGAGCGCGACCGGGCCCGGTGGAGGCCTGACGCCCTCCGCACCTCCGTACGGAGC
CGGTAAACATGCCCCGCCCCAGGCATTTCCCCCGTTCCCTGAGGGACATCCAGCCGTGTTGCCTGGAGAG
GACCCACCCCCCTACTCACCCTTGACTAGCCCGGATAGTGGGAGTGCCCCCATGATTACCTGTCGCGTCT
GTCAGTCTCCGATCAACGTGGAAGGCAAGATGCATCAGCATGTAGTCAAATGTGGTGTCTGCAACGAAGC
CACTCCCATCAAGAATGCACCTCCAGGAAAGAAGTATGTCCGATGCCCCTGTAATTGTCTCCTTATCTGC
AAAGTGACTTCTCAGCGGATTGCCTGCCCTCGGCCCTACTGCAAAAGAATCATCAACCTAGGGCCTGTGC
ATCCAGGACCTCTGAGTCCAGAGCCACAGCCAATGGGTGTCAGGGTCATCTGTGGACATTGCAAGAACAC
GTTTCTGTGGACAGAATTCACAGACCGAACCTTGGCACGATGCCCTCACTGCAGAAAAGTGTCATCTATT
GGGAGACGATATCCTAGGAAGAGATGTATTTGCTGCTTCTTGCTTGGTTTACTCTTGGCAGTCACTGCCA
CTGGCCTTGCTTTTGGTACATGGAAGCATGCACAGCAATATGGAGGGATCTACGCAGCCTGGGCATTTGT
CATTTTGTTGGCTGTTCTATGTTTGGGTCGGGCCCTTTATTGGGCTTGTATGAAGGTCAGCCATCCTGTC
CAGAACTTCTCCTGA

Translation (284 aa):
MAADGERSPLLSEAGDGGAGGNGLAGPGGSATGPGGGLTPSAPPYGAGKHAPPQAFPPFPEGHPAVLPGE
DPPPYSPLTSPDSGSAPMITCRVCQSPINVEGKMHQHVVKCGVCNEATPIKNAPPGKKYVRCPCNCLLIC
KVTSQRIACPRPYCKRIINLGPVHPGPLSPEPQPMGVRVICGHCKNTFLWTEFTDRTLARCPHCRKVSSI
GRRYPRKRCICCFLLGLLLAVTATGLAFGTWKHAQQYGGIYAAWAFVILLAVLCLGRALYWACMKVSHPV
QNFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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