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Report for CCDS26355.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26355.1 Public Mus musculus 13 H1f4 23 108 98 CCDS HistoryNCBI Gene:50709Re-query CCDS DB by CCDS ID:26355.1Re-query CCDS DB by GeneID:50709See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26355.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062045.3 ENSMUSP00000057308.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062045.3Link to Ensembl Protein Viewer:ENSMUSP00000057308.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000062045Re-query CCDS DB by Protein ID:ENSMUSP00000057308
Original member Current member NCBI NM_015787.4 NP_056602.1 Accepted alive Link to Nucleotide Sequence:NM_015787.4Link to Protein Sequence:NP_056602.1Re-query CCDS DB by Nucleotide ID:NM_015787Re-query CCDS DB by Protein ID:NP_056602Link to BLAST:NP_056602.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056602.1 219 P43274 219 100% 0 0

Chromosomal Locations for CCDS 26355.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 23621838 23622497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGTCCGAGACCGCGCCTGCTGCGCCCGCCGCACCGGCCCCCGCCGAGAAGACACCCGTCAAGAAGAAGG
CCCGCAAGGCCGCAGGTGGCGCGAAGCGCAAAACCTCCGGACCCCCGGTGTCCGAACTCATCACCAAGGC
TGTGGCCGCCTCCAAGGAGCGCAGCGGCGTGTCCCTGGCTGCGCTCAAGAAGGCGCTGGCGGCCGCGGGG
TACGATGTGGAGAAGAACAACAGCCGCATCAAGCTCGGCCTGAAGAGCCTGGTGAGCAAGGGTACCCTGG
TGCAGACCAAGGGCACCGGCGCCTCCGGCTCCTTCAAACTCAACAAGAAGGCGGCTTCCGGTGAGGCTAA
GCCCAAAGCAAAAAGGGCAGGCGCGGCCAAGGCGAAGAAGCCTGCGGGCGCAGCCAAGAAGCCCAAGAAG
GCTGCGGGGACAGCCACCGCCAAGAAGAGCACCAAGAAGACTCCAAAGAAAGCGAAGAAGCCAGCTGCAG
CTGCAGGAGCCAAAAAAGCTAAGAGCCCGAAGAAGGCAAAGGCAACTAAGGCTAAGAAGGCGCCCAAGAG
CCCTGCCAAGGCGAAAACGGTAAAGCCTAAAGCGGCCAAACCAAAAACCTCCAAGCCTAAGGCAGCTAAG
CCAAAGAAAACCGCAGCCAAGAAAAAGTAA

Translation (219 aa):
MSETAPAAPAAPAPAEKTPVKKKARKAAGGAKRKTSGPPVSELITKAVAASKERSGVSLAALKKALAAAG
YDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAKPKAKRAGAAKAKKPAGAAKKPKK
AAGTATAKKSTKKTPKKAKKPAAAAGAKKAKSPKKAKATKAKKAPKSPAKAKTVKPKAAKPKTSKPKAAK
PKKTAAKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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