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Report for CCDS25705.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25705.1 Public Mus musculus 11 Rbfox3 23 108 98 CCDS HistoryNCBI Gene:52897Re-query CCDS DB by CCDS ID:25705.1Re-query CCDS DB by GeneID:52897See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25705.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103023.7 ENSMUSP00000099312.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103023.7Link to Ensembl Protein Viewer:ENSMUSP00000099312.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000103023Re-query CCDS DB by Protein ID:ENSMUSP00000099312
Original member Current member EBI ENSMUST00000106278.8 ENSMUSP00000101885.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106278.8Link to Ensembl Protein Viewer:ENSMUSP00000101885.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106278Re-query CCDS DB by Protein ID:ENSMUSP00000101885
Original member Current member NCBI NM_001024931.2 NP_001020102.2 Accepted alive Link to Nucleotide Sequence:NM_001024931.2Link to Protein Sequence:NP_001020102.2Re-query CCDS DB by Nucleotide ID:NM_001024931Re-query CCDS DB by Protein ID:NP_001020102Link to BLAST:NP_001020102.2
Original member Current member NCBI NM_001285438.1 NP_001272367.1 Accepted alive Link to Nucleotide Sequence:NM_001285438.1Link to Protein Sequence:NP_001272367.1Re-query CCDS DB by Nucleotide ID:NM_001285438Re-query CCDS DB by Protein ID:NP_001272367Link to BLAST:NP_001272367.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020102.2 313 Q8BIF2-4 313 100% 0 0
NP_001272367.1 313 Q8BIF2-4 313 100% 0 0

Chromosomal Locations for CCDS 25705.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 118491239 118491241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118494150 118494228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118495218 118495282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118496351 118496390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118496938 118497070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118497187 118497240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118501569 118501629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118502842 118502934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118503720 118503773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118505623 118505760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118513150 118513371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGCCCAGCCCTACCCCCCTGCCCAGTACCCTCCTCCGCCTCAGAATGGAATCCCAGCTGAATATGCCC
CACCTCCGCCTCATCCCACCCAGGACTACTCCGGCCAGACCCCTGTTCCCCCCGAGCACGGCATGACCCT
CTACACACCCGCACAGACTCATCCTGAGCAGCCAGGCACTGAGGCCAGCACACAGCCCATTGCTGGGACC
CAGACGGTGCCGCAGGCAGATGAAGCAGCACAGACAGACAACCAGCAACTCCACCCTTCCGACCCCACGG
AGAAGCAGCAGCCCAAACGACTACATGTCTCCAACATCCCCTTCCGGTTCAGGGACCCCGACCTGCGGCA
AATGTTCGGGCAATTCGGGAAAATTTTAGACGTGGAGATCATTTTTAACGAGCGGGGCTCCAAGGGTTTT
GGGTTTGTAACTTTTGAAACTAGCTCAGATGCTGACCGAGCCCGGGAGAAGCTGAATGGGACGATCGTAG
AGGGACGGAAAATTGAGGTCAATAATGCCACAGCCCGGGTCATGACCAATAAGAAGCCTGGGAACCCATA
TGCCAATGGCTGGAAGCTAAACCCTGTGGTAGGAACAGTCTATGGGCCTGAATTCTATGCAGTGACCAGT
TTCCCCTACCCCACCACGGGCACCGCCGTTGCCTACCGGGGTGCACACCTGCGGGGCCGGGGCCGTGCTG
TGTATAATACATTTCGAGCTGCACCACCTCCACCCCCCATTCCAACTTATGGAGCGGTCGTGTATCAGGA
TGGATTTTATGGTGCTGAGATTTATGGAGGCTATGCAGCTTACAGATATGCTCAGCCAGCAGCCGCCACC
GCAGCAGCCTACAGTGACAGTTATGGTAGAGTCTATGCCGCTGCTGATCCTTACCATCACACCATCGGCC
CCACAGCAACCTACAGCATCGGAACCATGTGA

Translation (313 aa):
MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPPEHGMTLYTPAQTHPEQPGTEASTQPIAGT
QTVPQADEAAQTDNQQLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF
GFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKPGNPYANGWKLNPVVGTVYGPEFYAVTS
FPYPTTGTAVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPAAAT
AAAYSDSYGRVYAAADPYHHTIGPTATYSIGTM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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