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Report for CCDS70358.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70358.1 Public Mus musculus 11 Rbfox3 23 108 98 CCDS HistoryNCBI Gene:52897Re-query CCDS DB by CCDS ID:70358.1Re-query CCDS DB by GeneID:52897See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70358.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069343.11 ENSMUSP00000069598.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069343.11Link to Ensembl Protein Viewer:ENSMUSP00000069598.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000069343Re-query CCDS DB by Protein ID:ENSMUSP00000069598
Original member Current member NCBI NM_001285437.1 NP_001272366.1 Accepted alive Link to Nucleotide Sequence:NM_001285437.1Link to Protein Sequence:NP_001272366.1Re-query CCDS DB by Nucleotide ID:NM_001285437Re-query CCDS DB by Protein ID:NP_001272366Link to BLAST:NP_001272366.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272366.1 329 Q8BIF2-3 329 100% 0 0

Chromosomal Locations for CCDS 70358.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 118491239 118491241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118494150 118494228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118495218 118495282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118496351 118496531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118496938 118497070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118497187 118497240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118501569 118501629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118503720 118503773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118505623 118505760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118513150 118513371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGGCCCAGCCCTACCCCCCTGCCCAGTACCCTCCTCCGCCTCAGAATGGAATCCCAGCTGAATATGCCC
CACCTCCGCCTCATCCCACCCAGGACTACTCCGGCCAGACCCCTGTTCCCCCCGAGCACGGCATGACCCT
CTACACACCCGCACAGACTCATCCTGAGCAGCCAGGCACTGAGGCCAGCACACAGCCCATTGCTGGGACC
CAGACGGTGCCGCAGGCAGATGAAGCAGCACAGACAGACAACCAGCAACTCCACCCTTCCGACCCCACGG
AGAAGCAGCAGCCCAAACGACTACATGTCTCCAACATCCCCTTCCGGTTCAGGGACCCCGACCTGCGGCA
AATGTTCGGGCAATTCGGGAAAATTTTAGACGTGGAGATCATTTTTAACGAGCGGGGCTCCAAGGTCAAT
AATGCCACAGCCCGGGTCATGACCAATAAGAAGCCTGGGAACCCATATGCCAATGGCTGGAAGCTAAACC
CTGTGGTAGGAACAGTCTATGGGCCTGAATTCTATGCAGTGACCAGTTTCCCCTACCCCACCACGGGCAC
CGCCGTTGCCTACCGGGGTGCACACCTGCGGGGCCGGGGCCGTGCTGTGTATAATACATTTCGAGCTGCA
CCACCTCCACCCCCCATTCCAACTTATGGAGCGGCACTGGAGCAAACGCTTGTTAAAATGCCAGTCCCGT
GGGCGGGGCTGGCACCGTGCCCCCTCCCTCCTCAGCAGACACCGGAGCCGGCCTACCCCACCTCTCCAGC
GTTCCCACCACTCTCTTGTCCGTTTGCTTCCAGGGTCGTGTATCAGGATGGATTTTATGGTGCTGAGATT
TATGGAGGCTATGCAGCTTACAGATATGCTCAGCCAGCAGCCGCCACCGCAGCAGCCTACAGTGACAGTT
ATGGTAGAGTCTATGCCGCTGCTGATCCTTACCATCACACCATCGGCCCCACAGCAACCTACAGCATCGG
AACCATGTGA

Translation (329 aa):
MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPPEHGMTLYTPAQTHPEQPGTEASTQPIAGT
QTVPQADEAAQTDNQQLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKVN
NATARVMTNKKPGNPYANGWKLNPVVGTVYGPEFYAVTSFPYPTTGTAVAYRGAHLRGRGRAVYNTFRAA
PPPPPIPTYGAALEQTLVKMPVPWAGLAPCPLPPQQTPEPAYPTSPAFPPLSCPFASRVVYQDGFYGAEI
YGGYAAYRYAQPAAATAAAYSDSYGRVYAAADPYHHTIGPTATYSIGTM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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