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Report for CCDS25581.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25581.1 Public Mus musculus 11 Arsg 23 108 98 CCDS HistoryNCBI Gene:74008Re-query CCDS DB by CCDS ID:25581.1Re-query CCDS DB by GeneID:74008See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25581.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020928.12 ENSMUSP00000020928.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020928.12Link to Ensembl Protein Viewer:ENSMUSP00000020928.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000020928Re-query CCDS DB by Protein ID:ENSMUSP00000020928
Original member Current member EBI ENSMUST00000106697.7 ENSMUSP00000102308.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106697.7Link to Ensembl Protein Viewer:ENSMUSP00000102308.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106697Re-query CCDS DB by Protein ID:ENSMUSP00000102308
Original member Current member NCBI NM_001361975.1 NP_001348904.1 Accepted alive Link to Nucleotide Sequence:NM_001361975.1Link to Protein Sequence:NP_001348904.1Re-query CCDS DB by Nucleotide ID:NM_001361975Re-query CCDS DB by Protein ID:NP_001348904Link to BLAST:NP_001348904.1
Original member Current member NCBI NM_028710.3 NP_082986.3 Accepted alive Link to Nucleotide Sequence:NM_028710.3Link to Protein Sequence:NP_082986.3Re-query CCDS DB by Nucleotide ID:NM_028710Re-query CCDS DB by Protein ID:NP_082986Link to BLAST:NP_082986.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348904.1 525 Q3TYD4-1 525 100% 0 0
NP_082986.3 525 Q3TYD4-1 525 100% 0 0

Chromosomal Locations for CCDS 25581.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 109490433 109490650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109517242 109517429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109521657 109521704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109525383 109525494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109527746 109527883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109533909 109534105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109535257 109535337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109548014 109548122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109557951 109558071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109563182 109563272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109572219 109572493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGGGCTGGCTCTTTCTAAAGGTTTTGTTGGTTGGCATGGCTTTTTCTGGATTTTTCTACCCTCTCGTGG
ATTTCTCTATCAGTGGGAAAACAAGAGCCCCCCAACCAAACATCGTGATCATTTTGGCTGATGACATGGG
ATGGGGTGATCTGGGAGCAAACTGGGCAGAAACAAAGGACACCACCAATCTTGACAAGATGGCTTCCGAA
GGAATGAGGTTTGTAGACTTCCACGCAGCTGCTTCTACCTGCTCCCCATCCCGAGCCTCCCTGCTCACTG
GCCGGCTGGGTCTACGGAACGGAGTCACGCACAACTTCGCAGTCACCTCTGTAGGGGGGCTTCCAGTCAA
CGAGACCACCTTGGCAGAGGTGCTGCGACAGGAGGGTTACGTCACTGCCATGATAGGCAAGTGGCATCTT
GGGCATCATGGCTCTTATCATCCCAATTTCCGTGGCTTCGATTACTACTTTGGAATCCCATATAGCAATG
ACATGGGTTGCACTGATGCTCCAGGCTACAACTACCCTCCTTGTCCAGCGTGTCCACAGAGAGATGGCCT
ATGGAGGAACCCTGGGAGGGACTGTTACACAGATGTTGCCCTTCCTCTCTATGAAAACCTGAACATCGTG
GAGCAGCCTGTGAACCTGAGCGGCCTTGCACAGAAGTACGCAGAAAGGGCAGTGGAGTTCATTGAGCAGG
CAAGCACCAGTGGAAGACCCTTCCTGCTCTACGTGGGCCTGGCTCACATGCATGTGCCTTTGTCTGTAAC
TCCACCATTGGCACACCCACAGCGCCAAAGCCTGTACCGTGCAAGTCTCCGGGAGATGGACAGTCTGGTA
GGGCAGATCAAGGACAAAGTTGACCATGTGGCAAGAGAAAACACACTCCTCTGGTTTACAGGAGACAATG
GCCCATGGGCTCAGAAGTGTGAGCTGGCAGGCAGCGTGGGTCCCTTCTTCGGGTTGTGGCAAACCCATCA
AGGGGGAAGTCCAACCAAGCAGACCACCTGGGAAGGTGGGCATCGGGTTCCAGCACTGGCTTACTGGCCT
GGCAGAGTTCCAGCCAACGTCACTAGCACCGCCTTGTTAAGCTTGCTAGACATCTTCCCCACCGTGATAG
CTCTGGCAGGAGCCAGCTTGCCCCCAAACCGGAAATTTGATGGACGGGATGTCTCTGAGGTGCTCTTTGG
CAAGTCACAGATGGGGCACAGGGTGCTATTCCACCCCAACAGTGGGGCTGCTGGAGAGTATGGCGCCCTG
CAGACTGTCCGCCTAAACCATTACAAAGCTTTCTACATCACTGGTGGAGCCAAAGCTTGTGATGGGAGCG
TGGGTCCTGAGCAGCACCACGTGGCCCCTCTCATTTTCAACCTAGAAGATGCTGCTGATGAAGGGATGCC
TCTACAGAAGGGGAGCCCCGAGTACCAGGAGGTGCTGCAGCAGGTCACCAGGGCTCTCGCAGATGTCCTC
CAAGACATCGCTGATGACAACAGCTCCCGAGCAGACTACACTCAGGATCCTTCAGTGATTCCTTGCTGTA
ACCCCTATCAAACTACCTGCCGTTGCCAACCGGTCTGA

Translation (525 aa):
MGWLFLKVLLVGMAFSGFFYPLVDFSISGKTRAPQPNIVIILADDMGWGDLGANWAETKDTTNLDKMASE
GMRFVDFHAAASTCSPSRASLLTGRLGLRNGVTHNFAVTSVGGLPVNETTLAEVLRQEGYVTAMIGKWHL
GHHGSYHPNFRGFDYYFGIPYSNDMGCTDAPGYNYPPCPACPQRDGLWRNPGRDCYTDVALPLYENLNIV
EQPVNLSGLAQKYAERAVEFIEQASTSGRPFLLYVGLAHMHVPLSVTPPLAHPQRQSLYRASLREMDSLV
GQIKDKVDHVARENTLLWFTGDNGPWAQKCELAGSVGPFFGLWQTHQGGSPTKQTTWEGGHRVPALAYWP
GRVPANVTSTALLSLLDIFPTVIALAGASLPPNRKFDGRDVSEVLFGKSQMGHRVLFHPNSGAAGEYGAL
QTVRLNHYKAFYITGGAKACDGSVGPEQHHVAPLIFNLEDAADEGMPLQKGSPEYQEVLQQVTRALADVL
QDIADDNSSRADYTQDPSVIPCCNPYQTTCRCQPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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