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Report for CCDS17008.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17008.1 Public Mus musculus 2 Jph2 23 108 98 CCDS HistoryNCBI Gene:59091Re-query CCDS DB by CCDS ID:17008.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17008.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017961.10 ENSMUSP00000017961.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017961.10Link to Ensembl Protein Viewer:ENSMUSP00000017961.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000017961Re-query CCDS DB by Protein ID:ENSMUSP00000017961
Original member Current member EBI ENSMUST00000109425.2 ENSMUSP00000105052.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109425.2Link to Ensembl Protein Viewer:ENSMUSP00000105052.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109425Re-query CCDS DB by Protein ID:ENSMUSP00000105052
Original member Current member NCBI NM_001205076.1 NP_001192005.1 Accepted alive Link to Nucleotide Sequence:NM_001205076.1Link to Protein Sequence:NP_001192005.1Re-query CCDS DB by Nucleotide ID:NM_001205076Re-query CCDS DB by Protein ID:NP_001192005Link to BLAST:NP_001192005.1
Original member Current member NCBI NM_021566.2 NP_067541.1 Accepted alive Link to Nucleotide Sequence:NM_021566.2Link to Protein Sequence:NP_067541.1Re-query CCDS DB by Nucleotide ID:NM_021566Re-query CCDS DB by Protein ID:NP_067541Link to BLAST:NP_067541.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001192005.1 696 Q9ET78 696 100% 0 0
NP_067541.1 696 Q9ET78 696 100% 0 0

Chromosomal Locations for CCDS 17008.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 163338619 163338699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163339233 163339972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163341462 163341580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163375604 163376375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163397148 163397526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2091 nt):
ATGAGCGGGGGCCGCTTTGACTTTGATGATGGCGGGGCGTATTGTGGGGGCTGGGAAGGGGGAAAGGCAC
ACGGGCACGGACTGTGCACCGGCCCCAAGGGCCAGGGTGAATACTCGGGCTCCTGGAATTTTGGCTTTGA
AGTGGCAGGCGTCTATACCTGGCCCAGTGGGAATACCTTTGAGGGATATTGGAGCCAGGGCAAACGACAT
GGGCTTGGCATAGAGACCAAGGGGCGCTGGCTCTACAAGGGGGAGTGGACGCATGGCTTTAAGGGGCGCT
ACGGAATCCGGCAGAGCACAAACAGTGGTGCCAAGTACGAGGGCACTTGGAATAACGGCCTACAGGACGG
CTATGGCACGGAGACCTACGCAGACGGAGGAACCTATCAAGGCCAATTCACCAACGGCATGCGCCATGGC
TACGGTGTGCGCCAAAGCGTGCCCTACGGGATGGCAGTGGTGGTGCGTTCTCCGCTGCGCACTTCTCTGT
CCTCGCTGCGCAGCGAGCACAGCAATGGAACGGTGGCTCCGGACTCACCGGCGGCAGATGGGCCCATGCT
GCCTTCGCCCCCAGTGCCGCGCGGTGGTTTCGCGCTCACTCTGCTGGCCACAGCAGAGGCCGCGCGACCC
CAAGGGCTGTTCACGCGTGGCACACTGCTGGGTCGGCTGCGACGCTCAGAATCACGCACATCACTGGGCA
GCCAGCGGAGCCGCTTGAGCTTTCTCAAGAGCGAGCTGAGTTCCGGAGCCAGCGATGCCGCATCCACTGG
CAGCCTGGCCGAGGGCGCTGAGGGCCCCGACGACGCGGCTGCGCCCTTCGATGCCGACATCGACGCCACC
ACCACGGAAACCTACATGGGCGAGTGGAAGAACGACAAGCGCTCGGGCTTCGGCGTGAGCGAGCGTTCCA
GCGGCCTGCGCTACGAGGGCGAGTGGCTGGACAACCTGCGCCACGGCTACGGCCGCACCACGCTGCCCGA
CGGCCACCGCGAGGAGGGCAAGTACCGCCACAATGTGCTGGTCAAGGGCACCAAGCGCCGCGTGCTGCCG
CTCAAGAGCAGCAAGGTCCGCCAGAAGGTGGAGCACGGGGTGGAGGGCGCCCAGCGCGCAGCAGCCATCG
CGCGCCAGAAGGCCGAGATTGCCGCCTCCAGGACAAGCCATGCCAAAGCCAAGGCAGAGGCAGCAGAACA
GGCTGCCCTGGCTGCCAACCAGGAGTCCAACATCGCCCGTACATTGGCCAAGGAGCTGGCTCCAGACTTC
TACCAGCCAGGTCCGGAGTATCAGAAGCGTCGGCTGCTCCAGGAGATCCTGGAGAACTCTGAGAGCTTGC
TGGAGCCCCCAGAGCGGGGTCTGGGCACCGGCCTCCCGGAGCGGCCCCGGGAAAGCCCGCAGCTGCATGA
GCGCGAGACCCCGCAGCCCGAGGGCGGACCCCCGTCTCCGGCCGGGACGCCCCCGCAACCCAAGAGGCCC
CGGCCCGGAGCGTCAAAGGACGGCCTGCTGAGTCCAGGCTCCTGGAACGGGGAGCCCGGCGGAGAGGGCA
GCCGGCCCGCCACGCCGTCGGATGGCGCCGGTCGTCGCAGCCCCGCGCGCCCCGCCTCGGAGCACATGGC
CATCGAGGCGCTGCAGCCGCCGCCCGCGCCCTCGCAGGAGCCCGAGGTAGCAATGTACCGCGGCTACCAT
AGCTACGCCGTGCGCACCGGGCCACCCGAGCCTCCGCCCTTGGAGGATGAGCAGGAGCCCGAGCCGGAGC
CCGAGCCCGAGGTCCGGCGATCCGACTCGGCGCCCCCGTCCCCCGTCTCCGCCACCGTCCCGGAGGAGGA
GCCCCCTGCGCCGCGAAGCCCGGTGCCTGCCAAGCAAGCCACTCTGGAGCCCAAGCCCATCGTCCCCAAA
GCAGAGCCCAAGGCCAAGGCGCGCAAGACAGAGGCCCGAGGACTGAGCAAGGCCGGTGCCAAGAAGAAGG
GCCGTAAGGAAGTGGCGCAGGCGAAGGAGGCCGAGGTGGAGGTGGAGGAGGTACCCAACACCGTCCTCAT
CTGTATGGTGATCTTGCTGAACATCGGCCTGGCTATCCTATTTGTTCACCTCCTGACTTGA

Translation (696 aa):
MSGGRFDFDDGGAYCGGWEGGKAHGHGLCTGPKGQGEYSGSWNFGFEVAGVYTWPSGNTFEGYWSQGKRH
GLGIETKGRWLYKGEWTHGFKGRYGIRQSTNSGAKYEGTWNNGLQDGYGTETYADGGTYQGQFTNGMRHG
YGVRQSVPYGMAVVVRSPLRTSLSSLRSEHSNGTVAPDSPAADGPMLPSPPVPRGGFALTLLATAEAARP
QGLFTRGTLLGRLRRSESRTSLGSQRSRLSFLKSELSSGASDAASTGSLAEGAEGPDDAAAPFDADIDAT
TTETYMGEWKNDKRSGFGVSERSSGLRYEGEWLDNLRHGYGRTTLPDGHREEGKYRHNVLVKGTKRRVLP
LKSSKVRQKVEHGVEGAQRAAAIARQKAEIAASRTSHAKAKAEAAEQAALAANQESNIARTLAKELAPDF
YQPGPEYQKRRLLQEILENSESLLEPPERGLGTGLPERPRESPQLHERETPQPEGGPPSPAGTPPQPKRP
RPGASKDGLLSPGSWNGEPGGEGSRPATPSDGAGRRSPARPASEHMAIEALQPPPAPSQEPEVAMYRGYH
SYAVRTGPPEPPPLEDEQEPEPEPEPEVRRSDSAPPSPVSATVPEEEPPAPRSPVPAKQATLEPKPIVPK
AEPKAKARKTEARGLSKAGAKKKGRKEVAQAKEAEVEVEEVPNTVLICMVILLNIGLAILFVHLLT


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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