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Report for CCDS36018.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36018.1 Public Mus musculus 10 Abtb3 23 108 98 CCDS HistoryNCBI Gene:74007Re-query CCDS DB by CCDS ID:36018.1Re-query CCDS DB by GeneID:74007See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36018.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105306.2 ENSMUSP00000100943.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105306.2Link to Ensembl Protein Viewer:ENSMUSP00000100943.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105306Re-query CCDS DB by Protein ID:ENSMUSP00000100943
Original member Current member NCBI NM_001017525.1 NP_001017525.1 Accepted alive Link to Nucleotide Sequence:NM_001017525.1Link to Protein Sequence:NP_001017525.1Re-query CCDS DB by Nucleotide ID:NM_001017525Re-query CCDS DB by Protein ID:NP_001017525Link to BLAST:NP_001017525.1

Chromosomal Locations for CCDS 36018.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 85598480 85598577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85598725 85598877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85624903 85625068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85627197 85627286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85629212 85629313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85631088 85631181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85631293 85631428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85632089 85632309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85633684 85633862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85640503 85640608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85645488 85645590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85647712 85647793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85651607 85651675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85654478 85654591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 85658140 85658349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1923 nt):
ATGAGGAAACCGAGGCCAAGAGAGTCTAGAGAGCCTGACCCGGGGTCACCAGTGGGGTCAGGATGTCTCC
AAAGGCTCTCGCACTCAGGAGTTTCCAGGCCCTTCCTCGTGCTGCCCCCTCTCATGGAGTGGATCCGAGT
GGCCGTGGCGCATGCCGGCCACCGCCGCAGCTTTTCTATGGATAGCGACGATGTCCGCCAAGCCGCCCGG
CTGCTGCTTCCGGGAGTGGACTGCGAGCCGCGCCAGCTCAAGGCGGACGACTGCTTTTGTGCTTCTCGGA
AGCTGGACGCCGTGGCCATCGAAGCCAAGTTCAAGCAGGACTTGGGCTTCCGGATGCTGAATTGTGGACG
GACCGACCTGGTGAAGCAGGCAGTGTCTTTGCTGGGGCCGGATGGAATCAACACCATGAGCGAACAGGGT
ATGACCCCCTTGATGTACGCCTGCGTCCGTGGGGACGAGGCAATGGTGCAGATGCTGCTGGATGCCGGAG
CTGACCTGAATGTGGAGGTTGTCAGTACTCCTCATAAATATCCATCCGTCCACCCCGAGACCCGCCATTG
GACGGCTCTGACTTTTGCTGTGTTGCATGGACATATTCCTGTAGTTCAGCTCCTCCTGGATGCTGGGGCC
AAGGTGGAAGGCTCTGTGGAGCATGGCGAGGAGAACTATTCAGAAACTCCCCTCCAGCTTGCAGCCGCTG
TTGGAAATTTTGAGCTGGTTAGTTTGCTGTTGGAGCGTGGTGCGGATCCCCTGATAGGAACCATGTACAG
GAATGGAATTTCTACAACCCCCCAGGGTGATATGAACTCTTTCAGCCAGGCCGCAGCCCATGGACACAGG
AATGTGTTCCGCAAACTGCTCGCTCAGCCAGAGAAGGAGAAGAGCGATATCCTGTCCCTGGAGGAGATTC
TGGCTGAGGGGACTGACCTGGCAGAAACAGCCCCGCCCCCCTTGTGTGCCAGCCGCAACAGCAAGGCCAA
ACTGAGGGCCCTGAGGGAGGCCATGTATCACAGCGCTGAGCACGGCTACGTGGATGTCACAATTGATATC
AGGAGTATAGGTGTCCCATGGACTCTACACACATGGCTGGAGTCACTTCGGATTGCCTTCCAGCAACACC
GCAGACCTCTCATCCAGTGTTTGCTCAAGGAGTTCAAGACCATTCAAGAGGAGGAGTACACAGAGGAGCT
AGTCACCCAAGGCCTGCCCCTGATGTTTGAGATCTTAAAAGCAAGCAAGAATGAAGTGATCAGCCAGCAG
CTGTGCGTCATCTTCACACACTGTTACGGTCCCTACCCCATCCCCAAGCTCACGGAGATCAAGAGGAAGC
AGACCTCACGCCTGGACCCTCATTTTCTTAACAATAAAGAGATGTCCGACGTGACCTTTCTGGTAGAGGG
AAGACCCTTCTACGCTCACAAAGTGCTCTTGTTCACAGCCTCTCCCAGGTTCAAGGCCCTCCTCTCCAGC
AAGCCAACAAATGACAACACCTGCATAGAGATTGGCTACGTGAAGTATCCCATCTTCCAGCTCGTCATGC
AGTATCTCTACTACGGTGGCCCAGAGTCACTTCTCATTAAAAACAATGAGATCATGGAGCTTCTGTCTGC
TGCTAAATTTTTCCAGCTGGAGGCTCTGCAGCGACACTGTGAGATTATCTGTGCAAAAAGCATCAATACT
GACAACTGTGTGGATATCTACAGCCACGCCAAGTTCCTTGGGGTGACAGAGCTCTCGGCGTACTGTGAAG
GCTACTTTCTTAAAAATATGATGGTCCTTATTGAAAACGAAGCGTTCAAGCAGCTCCTGTACGACAAAAA
TGGCGAAGGGGCGGGCCAGGATGTGCTTCAGGACCTACAGAGGACGTTGGCCATTAGGATTCAGTCTATC
CACCTGTCGTCTTCCAAGGGTTCCGTGGTATGA

Translation (640 aa):
MRKPRPRESREPDPGSPVGSGCLQRLSHSGVSRPFLVLPPLMEWIRVAVAHAGHRRSFSMDSDDVRQAAR
LLLPGVDCEPRQLKADDCFCASRKLDAVAIEAKFKQDLGFRMLNCGRTDLVKQAVSLLGPDGINTMSEQG
MTPLMYACVRGDEAMVQMLLDAGADLNVEVVSTPHKYPSVHPETRHWTALTFAVLHGHIPVVQLLLDAGA
KVEGSVEHGEENYSETPLQLAAAVGNFELVSLLLERGADPLIGTMYRNGISTTPQGDMNSFSQAAAHGHR
NVFRKLLAQPEKEKSDILSLEEILAEGTDLAETAPPPLCASRNSKAKLRALREAMYHSAEHGYVDVTIDI
RSIGVPWTLHTWLESLRIAFQQHRRPLIQCLLKEFKTIQEEEYTEELVTQGLPLMFEILKASKNEVISQQ
LCVIFTHCYGPYPIPKLTEIKRKQTSRLDPHFLNNKEMSDVTFLVEGRPFYAHKVLLFTASPRFKALLSS
KPTNDNTCIEIGYVKYPIFQLVMQYLYYGGPESLLIKNNEIMELLSAAKFFQLEALQRHCEIICAKSINT
DNCVDIYSHAKFLGVTELSAYCEGYFLKNMMVLIENEAFKQLLYDKNGEGAGQDVLQDLQRTLAIRIQSI
HLSSSKGSVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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