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Report for CCDS56737.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56737.1 Public Mus musculus 10 Tle2 23 108 98 CCDS HistoryNCBI Gene:21886Re-query CCDS DB by CCDS ID:56737.1Re-query CCDS DB by GeneID:21886See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56737.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000135211.7 ENSMUSP00000117453.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000135211.7Link to Ensembl Protein Viewer:ENSMUSP00000117453.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000135211Re-query CCDS DB by Protein ID:ENSMUSP00000117453
Original member NCBI NM_001252401.1 NP_001239330.1 Updated not alive Link to Nucleotide Sequence:NM_001252401.1Link to Protein Sequence:NP_001239330.1Re-query CCDS DB by Nucleotide ID:NM_001252401Re-query CCDS DB by Protein ID:NP_001239330
Current member NCBI NM_001252401.2 NP_001239330.1 Accepted alive Link to Nucleotide Sequence:NM_001252401.2Link to Protein Sequence:NP_001239330.1Re-query CCDS DB by Nucleotide ID:NM_001252401Re-query CCDS DB by Protein ID:NP_001239330Link to BLAST:NP_001239330.1

Chromosomal Locations for CCDS 56737.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 81575668 81575691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81575805 81575902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81576236 81576299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81576598 81576642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81577629 81577691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81580257 81580298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81580484 81580667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81580895 81580914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81581645 81581755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81582413 81582457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81582737 81582886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81584603 81584741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81586213 81586373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81586858 81586928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81587092 81587341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81587553 81587800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81587874 81588021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81588809 81588959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81589420 81589496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81590225 81590332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2199 nt):
ATGTACCCTCAGGGAAGGCACCCGACCCCGCTGCAGTCTGGCCAGCCTTTCAAGTTCTCAGTACTGGAAA
TCTGTGACCGGATCAAAGAGGAATTCCAGTTTCTTCAAGCTCAGTACCACAGCCTCAAGCTAGAATGTGA
GAAGCTGGCCAGCGAGAAGACAGAAATGCAAAGGCATTATGTGATGTACTACGAGATGTCCTACGGACTC
AACATTGAGATGCATAAACAGGCTGAGATTGTGAAACGCCTCAGTGCGATCTGTGCCCAGATGGTCCCGT
TCCTCACTCAGGAGCATCAGCAGCAGGTGCTCCAGGCTGTGGACCGAGCCAAGCAGCAGCAGAATCAGCT
CCAGCCGCTGTCCCACGCACCCCCCGTGCCTCTCACCCCGCGCCCAGCCGGCCTGGTGGGTGCCGGGGCC
ACTGGGCTGCTGGCCCTATCTGGGGCACTGGCTGCGCAGGCCCAGCTGGTGGCTGCCGTAAAGGAAGACC
GTGTGGGTGTGGACGCCGAGGGGTCCAGAGTGGACAGAGCTGCCAGCAGGAGTTCTTCCCCGTCTCCCCC
TGAGAGTCTGGTGGAAGAGGACCATCCCAGCAGCCGAGGCGGCAGTGGGAAACAGCAGAGAGCTGAAGAC
AAGGATCTGTCAGGGCCTTATGACAGTGAGGAAGACAAGAGTGACTATAACCTGGTAGTGGATGAGGACC
AACCGTCAGAGCCCCCCAGCCCTGTGACCACCCCTTGTGGGAAGGCGCCCCTCTGCATTCCTGCCCGCAG
GGACCTCACAGACAGTCCAGCCTCCTTGGCCTCCAGTTTGGGCTCACCACTCCCCAGAAGCAAAGACATA
GCCCTGAACGATCTTCCCACAGGCACTCCTGCCTCCAGGTCATGTGGTACCTCTCCACCCCAGGACTCGT
CCACCCCGGGGCCCAGCTCAGCCAGTCACCTCTGCCAGCTGGCGGCTCAGCCGGCAGCACCCACAGACAG
CATCGCCCTGAGGAGTCCCCTGACCTTGTCCAGCCCTTTCACCTCATCCTTCAGCCTGGGCTCCCACAGC
ACCCTCAATGGGGACCTCTCCATGCCTGGCTCCTATGTCGGCCTCCACCTGTCCCCCCAGGTCAGCAGCT
CTGTCGTGTATGGACGCTCACCTCTGATGGCATTTGAATCGCACCCCCATCTCCGAGGCTCGTCTGTCTC
CTTGCCTGGCATCCCTGTGGCTAAGCCGGCTTACTCCTTCCACGTGTCTGCGGATGGCCAGATGCAGCCT
GTGCCCTTCCCGTCTGATGCTCTGGTAGGCACAGGCATCCCTCGCCACGCAAGGCAGCTACACACGCTGG
CCCACGGTGAGGTGGTGTGTGCCGTCACCATCAGCAGCTCCACACAGCACGTGTACACAGGCGGCAAAGG
ATGCGTGAAGGTGTGGGACGTGGGCCAGCCGGGTAGCAAGACCCCTGTGGCACAGCTGGATTGCCTGAAC
CGAGACAACTACATCCGCTCCTGCAAGCTGCTGCCCGACGGGCAGAGCCTGATTGTAGGTGGCGAGGCCA
GTACCCTGTCCATTTGGGACCTGGCAGCACCCACACCACGGATCAAAGCAGAGCTGACTTCGTCTGCCCC
GGCCTGCTATGCTCTGGCCGTCAGTCCGGACGCCAAGGTCTGCTTCTCCTGCTGCAGCGACGGTAACATC
GTGGTCTGGGACCTGCAGAACCAGGCCATGGTCAGACAGTTCCAGGGCCACACGGACGGGGCCAGCTGCA
TCGACATATCAGACTACGGGACCCGGCTGTGGACTGGGGGCCTGGACAACACTGTGCGCTGCTGGGACCT
GCGCGAGGGCCGCCAGCTTCAGCAGCATGACTTCAGTTCCCAGATTTTCTCATTGGGCCACTGTCCCAAT
CAGGACTGGTTGGCTGTGGGGATGGAGAGCAGCCACGTGGAGGTCCTGCATGTGCGCAAGCCTGAGAAGT
ACCAGCTCCGCCTCCATGAGAGCTGCGTGCTGTCACTCAAGTTCGCTTCCTGTGGACGCTGGTTTGTGAG
CACAGGCAAGGACAACCTGCTCAATGCCTGGAGGACACCCTATGGGGCCAGCATTTTTCAGTCCAAAGAA
TCATCTTCTGTACTGAGCTGCGACATCTCCAGGAATAATAAGTACATCGTGACAGGCTCAGGGGACAAGA
AGGCCACTGTGTATGAGGTGGTGTACTGA

Translation (732 aa):
MYPQGRHPTPLQSGQPFKFSVLEICDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGL
NIEMHKQAEIVKRLSAICAQMVPFLTQEHQQQVLQAVDRAKQQQNQLQPLSHAPPVPLTPRPAGLVGAGA
TGLLALSGALAAQAQLVAAVKEDRVGVDAEGSRVDRAASRSSSPSPPESLVEEDHPSSRGGSGKQQRAED
KDLSGPYDSEEDKSDYNLVVDEDQPSEPPSPVTTPCGKAPLCIPARRDLTDSPASLASSLGSPLPRSKDI
ALNDLPTGTPASRSCGTSPPQDSSTPGPSSASHLCQLAAQPAAPTDSIALRSPLTLSSPFTSSFSLGSHS
TLNGDLSMPGSYVGLHLSPQVSSSVVYGRSPLMAFESHPHLRGSSVSLPGIPVAKPAYSFHVSADGQMQP
VPFPSDALVGTGIPRHARQLHTLAHGEVVCAVTISSSTQHVYTGGKGCVKVWDVGQPGSKTPVAQLDCLN
RDNYIRSCKLLPDGQSLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAVSPDAKVCFSCCSDGNI
VVWDLQNQAMVRQFQGHTDGASCIDISDYGTRLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGHCPN
QDWLAVGMESSHVEVLHVRKPEKYQLRLHESCVLSLKFASCGRWFVSTGKDNLLNAWRTPYGASIFQSKE
SSSVLSCDISRNNKYIVTGSGDKKATVYEVVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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