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Report for CCDS15577.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15577.1 Public Mus musculus 1 Lefty1 23 108 98 CCDS HistoryNCBI Gene:13590Re-query CCDS DB by CCDS ID:15577.1Re-query CCDS DB by GeneID:13590See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15577.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037361.8 ENSMUSP00000041427.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037361.8Link to Ensembl Protein Viewer:ENSMUSP00000041427.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000037361Re-query CCDS DB by Protein ID:ENSMUSP00000041427
Original member Current member NCBI NM_010094.4 NP_034224.1 Accepted alive Link to Nucleotide Sequence:NM_010094.4Link to Protein Sequence:NP_034224.1Re-query CCDS DB by Nucleotide ID:NM_010094Re-query CCDS DB by Protein ID:NP_034224Link to BLAST:NP_034224.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034224.1 368 Q64280 368 100% 0 0

Chromosomal Locations for CCDS 15577.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 180935110 180935359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180936547 180936793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180937009 180937254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180937612 180937975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGCCATTCCTGTGGCTCTGCTGGGCACTCTGGGCACTGTCGCTGGTTAGCCTCAGGGAAGCCCTGACCG
GAGAGCAGATCCTGGGCAGCCTGCTGCAACAGCTGCAGCTCGATCAACCGCCAGTCCTGGACAAGGCTGA
TGTGGAAGGGATGGTCATCCCCTCGCACGTGAGGACTCAGTATGTGGCCCTGCTACAACACAGCCATGCC
AGCCGCTCCCGAGGCAAGAGGTTCAGCCAGAACCTTCGAGAGGTGGCAGGCAGGTTCCTGGTGTCAGAGA
CCTCCACTCACCTGCTAGTGTTCGGAATGGAGCAGCGGCTGCCGCCTAACAGCGAGCTGGTGCAGGCTGT
GCTGCGGCTGTTCCAGGAGCCTGTGCCCAGAACAGCTCTCCGGAGGCAAAAGAGGCTGTCCCCACACAGT
GCCCGGGCTCGGGTCACCATTGAATGGCTGCGCTTCCGCGACGACGGCTCCAACCGCACTGCCCTTATCG
ATTCTAGGCTCGTGTCCATCCACGAGAGCGGCTGGAAGGCCTTCGACGTGACCGAGGCCGTGAACTTCTG
GCAGCAGCTGAGCCGGCCGAGGCAGCCGCTGCTGCTCCAGGTGTCGGTGCAGAGGGAGCATCTGGGGCCG
GGAACCTGGAGCTCACACAAGTTGGTTCGTTTCGCGGCGCAGGGGACGCCGGATGGCAAGGGGCAGGGCG
AGCCACAGCTGGAGCTGCACACGCTGGACCTCAAGGACTATGGAGCTCAAGGCAATTGTGACCCCGAGGC
ACCAGTGACTGAAGGCACCCGATGCTGTCGCCAGGAGATGTACCTGGACCTGCAGGGGATGAAGTGGGCC
GAGAACTGGATCCTAGAACCGCCAGGGTTCCTGACATATGAATGTGTGGGCAGCTGCCTGCAGCTACCGG
AGTCCCTGACCAGCAGGTGGCCATTTCTGGGGCCTCGGCAGTGTGTCGCCTCAGAGATGACCTCCCTGCC
CATGATTGTCAGCGTGAAGGAGGGAGGCAGGACCAGGCCTCAAGTGGTCAGCCTGCCCAACATGAGGGTG
CAGACCTGTAGCTGCGCCTCAGATGGGGCGCTCATACCCAGGAGGCTGCAGCCATAG

Translation (368 aa):
MPFLWLCWALWALSLVSLREALTGEQILGSLLQQLQLDQPPVLDKADVEGMVIPSHVRTQYVALLQHSHA
SRSRGKRFSQNLREVAGRFLVSETSTHLLVFGMEQRLPPNSELVQAVLRLFQEPVPRTALRRQKRLSPHS
ARARVTIEWLRFRDDGSNRTALIDSRLVSIHESGWKAFDVTEAVNFWQQLSRPRQPLLLQVSVQREHLGP
GTWSSHKLVRFAAQGTPDGKGQGEPQLELHTLDLKDYGAQGNCDPEAPVTEGTRCCRQEMYLDLQGMKWA
ENWILEPPGFLTYECVGSCLQLPESLTSRWPFLGPRQCVASEMTSLPMIVSVKEGGRTRPQVVSLPNMRV
QTCSCASDGALIPRRLQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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