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Report for CCDS15571.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15571.1 Public Mus musculus 1 Mixl1 23 108 98 CCDS HistoryNCBI Gene:27217Re-query CCDS DB by CCDS ID:15571.1Re-query CCDS DB by GeneID:27217See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15571.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027778.7 ENSMUSP00000027778.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027778.7Link to Ensembl Protein Viewer:ENSMUSP00000027778.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027778Re-query CCDS DB by Protein ID:ENSMUSP00000027778
Original member Current member NCBI NM_013729.3 NP_038757.1 Accepted alive Link to Nucleotide Sequence:NM_013729.3Link to Protein Sequence:NP_038757.1Re-query CCDS DB by Nucleotide ID:NM_013729Re-query CCDS DB by Protein ID:NP_038757Link to BLAST:NP_038757.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038757.1 231 Q9WUI0 231 100% 0 0

Chromosomal Locations for CCDS 15571.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 180694619 180694921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180696620 180697012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (696 nt):
ATGGCCGCAGCAGGGTCCCAGCAGCTCCAGTTCGCAGAAGGCGCCGCTTTCCCCATCTTCCCCGCCGCGC
ATCCCGGAGGGCAGCTGCTCCCAGCCATGCGCCCAGCCTCTGGGCTGCCCGCGGCGCCCCACGACTCTCG
CGCCCCAGCAGCCACGCAGTGCTTTCCAAACCGCGACTCCAGTCCCACAGCGCAGACCCCCGCCGGCCTG
GATCCGCCCGGACCCTCCAAAGGCTCGGCCGCCCCGTCGGCGCCACAGCGCCGCAAGCGCACGTCGTTCA
GCTCGGAGCAGCTGCAGTTGCTGGAGCTCGTCTTCCGACAGACCATGTACCCAGACATCCACTTGCGGGA
GCGCCTGGCTGCGCTCACGCTGCTACCCGAGTCCAGGATCCAGGTGTGGTTCCAGAACCGACGGGCCAAG
TCCAGGCGCCAGAGTGGGAAGTCATTTCAGCCCTTATCCTCAAGGCGGGGAGTTTTCCTCCATTGCCCTG
CTCCTGGGACTGAAGCTAGGTGTTTGAAGCCTCAGCTGCCCCTGGAGGCAGATGTGAACCACGTTCCGGA
TCCCAGCATGACTGGAGGAGGCGTCTGCACATCTGGTTCTCAGAGTTTTGAAACGTATTCGTCTCTCTCT
GAAGATATTGGCTCAAAGTTGGACTCCTGGGAGGAGCACATCTTTTCTGCCTTAGGTAACTTCTGA

Translation (231 aa):
MAAAGSQQLQFAEGAAFPIFPAAHPGGQLLPAMRPASGLPAAPHDSRAPAATQCFPNRDSSPTAQTPAGL
DPPGPSKGSAAPSAPQRRKRTSFSSEQLQLLELVFRQTMYPDIHLRERLAALTLLPESRIQVWFQNRRAK
SRRQSGKSFQPLSSRRGVFLHCPAPGTEARCLKPQLPLEADVNHVPDPSMTGGGVCTSGSQSFETYSSLS
EDIGSKLDSWEEHIFSALGNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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