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Report for CCDS15249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15249.1 Public Mus musculus 1 Rab3gap1 23 108 98 CCDS HistoryNCBI Gene:226407Re-query CCDS DB by CCDS ID:15249.1Re-query CCDS DB by GeneID:226407See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15249.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037649.5 ENSMUSP00000042070.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037649.5Link to Ensembl Protein Viewer:ENSMUSP00000042070.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000037649Re-query CCDS DB by Protein ID:ENSMUSP00000042070
Original member NCBI NM_178690.4 NP_848805.2 Updated not alive Link to Nucleotide Sequence:NM_178690.4Link to Protein Sequence:NP_848805.2Re-query CCDS DB by Nucleotide ID:NM_178690Re-query CCDS DB by Protein ID:NP_848805
Current member NCBI NM_178690.5 NP_848805.2 Accepted alive Link to Nucleotide Sequence:NM_178690.5Link to Protein Sequence:NP_848805.2Re-query CCDS DB by Nucleotide ID:NM_178690Re-query CCDS DB by Protein ID:NP_848805Link to BLAST:NP_848805.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848805.2 981 Q80UJ7 981 100% 0 0

Chromosomal Locations for CCDS 15249.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 127868812 127868829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127868925 127868980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127874080 127874155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127889156 127889288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127891018 127891096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127901579 127901698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127903672 127903837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127909851 127909950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127915639 127915720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127918221 127918289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127919568 127919641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127924728 127924820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127925275 127925441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127927460 127927549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127927949 127928121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127930390 127930444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127930707 127931078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127934417 127934554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127937338 127937565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127937989 127938085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127938198 127938301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127938575 127938690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127939046 127939148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 127942374 127942610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2946 nt):
ATGGCGGCGGACAGTGAGCCCGAGTCCGAAGTGTTTGAGATCACAGACTTCACCACAGCCTCGGAGTGGG
AGAGGTTTATTTCCAAAGTTGAAGAAGTCTTGAATGACTGGAAACTGATTGGACCCTCTCTGGGAAAGCC
ACTGGAAAAGGGTATATTTACTTCTGGCACATGGGAAGAGCGATCAGATGAAATTTCCTTTGCTGACTTC
AGGTTTTCAGTCACACATCACTATCTTGTACAAGAGTCTCCTGATAAAGAAAGAAAGGATGAAGAATTGG
AGGACGCTATTCCACAGTCAATGCAAGATTTGCTATGTATGAATAACGACTTTCCTCCAAGAGCACATTG
CCTGGTAAGATGGTATGGCCTGCGTGAGTTTGTGGTGATTGCTCCTGCTGCACACAGTGATGCAGTTCTC
AGTGAATCCAAGTGTAACCTCCTCCTTAGTTCCATTTCTATTGCTTTGGGAAACACTGGCTGCCAGGTAC
CACTGTTTGTCCAAATACATCACAAATGGCGACGAATGTACATGGGAGAATGTCAAGGTCCTGGTGTTCG
TACTGACTTTGAAATGGTTCATCTTCGAAAAGTGCCAAGTCAGTACACTCATTTGTCAGGCCTGCTGGAC
ATCTTCAAATCCAAAATTGGCTGTCCTTTAACTCCATTGCCTCCAGTTAGCATTGCGATTCGGCTCACAT
ACGTGCTTCAGGATTGGCAGCAATACTTTTGGCCTCAGCAGCCTCCAGATATAGATGCCCTTGTGGGAGG
AGAAGTTGGGGGCCTGGAGTTCGGCAAGTTGCCATTTGGTGCCTGTGAAGATCCTATCAGTGAACTCCAT
TTAGCAACAACGTGGCCTCATTTGACAGAAGGGATCATTGTAGATAATGATGTTTATTCTGATTTGGATC
CTGTTCAAGCTCCCCATTGGTCGGTTAGAGTTCGGAAAGCTGATAATCCCCAGTGCTTACTAGGTGATTT
TGTTACTGAATTTTTAAAAATTTGCCGTCGAAAGGAATCAACGGATGAAATTCTTGGACGATCCACATTT
GAAGAAGAGGGAAGAGAAGTTGCTGATATAACTCATGCTTTGTCAAAGCTGACTGAGCCAGCGCCAGTTC
CAATTCATAAATTATCAGTTTCAAATATGGTACACACTGCAAAGAAGAAGATACGGAAGCACAGAGGGGA
AGAGTCGCCGCTGAACAGTGATGTTCTCAATACTATTCTCTTGTTCTTGTTCCCAGATGCTGTCTCTGAG
AAGCCGTTAGATGGAACTACTTCAATAGACAATAGCATTCCTGCACCAGAGGCTGGAGACTATACTCTCT
ACAATCAGTTCAAGTCTGCGCCTTCCGACAGTCTAACATACAAACTGGCCTTGTGTCTTTGTATGATCAA
CTTCTACCATGGAGGGCTGAAGGGAGTGGCACATCTCTGGCAGGAATTTGTTCTTGAAATGCGTTTCAGA
TGGGAAAACAACTTTCTGATTCCAGGACTAGCAAGTGGATCACCAGATCTAAGATGCTGCTTACTGCATC
AGAAACTACAGATGTTAAATTGTTGTATTGAAAGGAAGAAAGCACGTGATGAAGGGAAAAAGACGAGCCT
CTCGGATAGTACGACTAGTGCATATCCAGGGGATGCTGGGAAAACTGGAGGCCAGCTGGGCCTGGACCAT
CTCAGAGATACAGAGAAGGAAAAGGGAGAAGTAGGGAAGTCCTGGGATTCCTGGAGTGATAGTGAAGAAG
AGTTTTTTGAATGCCTCAGTGATACGGAAGACCTTAAAGGAAACGGACAGGAGAGTGGTAAGAAAGGCGG
TCCCAAGGAGATGGCAAACTTAAAGCCAGAAGGCCGCCTGCACCAGCACGGGAAACTTACCCTGCTGCAT
AATGGAGAGCCTCTCTACATTCCAGTGACCCAGGAACCAGCACCCATGACAGAAGATCTGCTGGAAGAGC
AGTCTGAGGTCTTAGCAAAATTAGGGACATCTGCTGAGGGGGCGCACCTCCGCGCACGCATGCAGAGTGC
CTGTCTCCTCTCCGATATGGAGTCTTTTAAGGCAGCTAATCCAGGCTGCTTTCTGGAAGATTTCGTGAGG
TGGTACTCACCAAGGGACTACATTGAGGAGGAGGTGACTGACGAGAAGGGCAATGTGGTCCTGAAGGGGG
AGCTGAGTGCCCGTATGAAGATCCCCAGCAACATGTGGGTAGAAGCCTGGGAGACTGCTAAGCCTGTGCC
AGCACGACGTCAGAGGAGACTGTTTGATGACACCCGAGAGGCTGAAAAGGTCCTGCACTACCTGGCCATG
CAGAAGCCTGCAGACCTAGCCAGGCACCTCCTGCCTTGTGTGATTCATGCAGCTGTTCTCAAGGTAAAGG
AAGAAGAAAGTCTGGAAAACATTCCTTCTGTTAAGAAGATTATAAAGCAGATCATAGCCCATTCCAGCAA
AGTTCTGCATTTCCCCAATCCTGAGGACAAGAAACTGGAAGAAATCATCCTTCAGATTACTACTGTGGAA
GCTATAATAGCCCGAGCCCGGTCCCTGAAGGCCAAATTTGGAACTGAGAAGTGTGAGCACGAGGAGGAAA
AGGAAGGTCTGGAAAGGTTTGTCAGCTGCCTGCTGGAGCAGCCTGAGGTATCAGTCACTGGGGCAGGAAG
AGGACATGCTGGCCGCATCATCCACAAGCTGTTTGTGAATGCTCAGCGGGCTGCGGCAGTGGCTCTGCCA
GAGGAGGAGCTTAAGAAATCAGGCTGCCCAGAGGAGAGAAGACAGACCTTGGTGTCAGACTTCCCACCAC
CTGCAGGCCGGGAGCTGATCCTGAGGGCCACTGTGCCGCGGCCTGCTCCCTACTCCAAGGCCCTGCCACA
GCGTATGTACAGCGTACTCACCAAGGAGGACTTCAGACTCGCGGGTGCCTTTTCCTCAGACACCTCCTTT
TTCTAG

Translation (981 aa):
MAADSEPESEVFEITDFTTASEWERFISKVEEVLNDWKLIGPSLGKPLEKGIFTSGTWEERSDEISFADF
RFSVTHHYLVQESPDKERKDEELEDAIPQSMQDLLCMNNDFPPRAHCLVRWYGLREFVVIAPAAHSDAVL
SESKCNLLLSSISIALGNTGCQVPLFVQIHHKWRRMYMGECQGPGVRTDFEMVHLRKVPSQYTHLSGLLD
IFKSKIGCPLTPLPPVSIAIRLTYVLQDWQQYFWPQQPPDIDALVGGEVGGLEFGKLPFGACEDPISELH
LATTWPHLTEGIIVDNDVYSDLDPVQAPHWSVRVRKADNPQCLLGDFVTEFLKICRRKESTDEILGRSTF
EEEGREVADITHALSKLTEPAPVPIHKLSVSNMVHTAKKKIRKHRGEESPLNSDVLNTILLFLFPDAVSE
KPLDGTTSIDNSIPAPEAGDYTLYNQFKSAPSDSLTYKLALCLCMINFYHGGLKGVAHLWQEFVLEMRFR
WENNFLIPGLASGSPDLRCCLLHQKLQMLNCCIERKKARDEGKKTSLSDSTTSAYPGDAGKTGGQLGLDH
LRDTEKEKGEVGKSWDSWSDSEEEFFECLSDTEDLKGNGQESGKKGGPKEMANLKPEGRLHQHGKLTLLH
NGEPLYIPVTQEPAPMTEDLLEEQSEVLAKLGTSAEGAHLRARMQSACLLSDMESFKAANPGCFLEDFVR
WYSPRDYIEEEVTDEKGNVVLKGELSARMKIPSNMWVEAWETAKPVPARRQRRLFDDTREAEKVLHYLAM
QKPADLARHLLPCVIHAAVLKVKEEESLENIPSVKKIIKQIIAHSSKVLHFPNPEDKKLEEIILQITTVE
AIIARARSLKAKFGTEKCEHEEEKEGLERFVSCLLEQPEVSVTGAGRGHAGRIIHKLFVNAQRAAAVALP
EEELKKSGCPEERRQTLVSDFPPPAGRELILRATVPRPAPYSKALPQRMYSVLTKEDFRLAGAFSSDTSF
F


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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