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Report for CCDS78662.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78662.1 Public Mus musculus 1 Gin1 23 108 98 CCDS HistoryNCBI Gene:252876Re-query CCDS DB by CCDS ID:78662.1Re-query CCDS DB by GeneID:252876See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78662.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027571.12 ENSMUSP00000027571.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027571.12Link to Ensembl Protein Viewer:ENSMUSP00000027571.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027571Re-query CCDS DB by Protein ID:ENSMUSP00000027571
Original member Current member NCBI NM_001310773.1 NP_001297702.1 Accepted alive Link to Nucleotide Sequence:NM_001310773.1Link to Protein Sequence:NP_001297702.1Re-query CCDS DB by Nucleotide ID:NM_001310773Re-query CCDS DB by Protein ID:NP_001297702Link to BLAST:NP_001297702.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297702.1 429 Q8K259-2 429 100% 0 0

Chromosomal Locations for CCDS 78662.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 97775454 97775592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97777326 97777519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97783194 97783232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97784753 97784944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97785055 97785222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97785976 97786258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 97792297 97792571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGGTCCGTAGTGGGAAAAATGGTGACCTTCATCTTAAACAGATTGCATACTATAAGCGCACAGGGGAAT
ATCACCCCACTACACTGCCGAGTGAGAGAAGCGGCATAAGACGAGCAGCTAAGAAATTTGTCTTCAAAGA
AAAAAAGCTGTTTTATGTTGGAAAAGACAGAAAACAAAATCGTTTGGTAGTTGTTTCGGAAGAGGAGAAG
AAGAAAGTACTGAGAGAGTGCCATGAGAATGGCCCTGGTGTCCATCACGGCATTTCCAGAACCCTCACTC
TAGTGGAGTCTGGCTACTACTGGACGTCCGTGACCAATGACGTCAAGCAGTGGAAAATAATAATGGACCA
AAGAGATGAATTCATTGAACAGATCAATGTAGAACTATATAGATTATTTGGTGCAAAAGAGATTGTAATT
TCTCGTGCTTCTGGAAGTGTTAATCCAGCTGAAAACACACCTAGCACCATCAAAACATTCCTCTCCAAAC
ACTGTGCCGACCACCCCAACAGCTGGGATGAGCATCTGCCAGCCCTTTCCTTTGCCTTCAATGTCACTCA
CTTGGAGCCTAATAAAAACACACCGTATTTCCAAATGTTCAATCGGAATCCTTGCGTGTTGGAGTGTCCT
CCTGAAGAGGGCAGTGAAGGTACAAGTGTGTTTGCCAGAATCGTAGCTGCGATTAGAGAGGCTGATGGCG
TGGTGGAGAACAAGACACCAGCATCGAGCCAGATGGAGAACAACAATTCGGATGAACTGAGTAAAAGCAA
AGTTGTTAAAAAGAAAGCAAAGCAGTTAAATCCCTTTCATTTGAAAGTGGGTCATGAGGTTTTACGACAG
AGGAAGAACTGGTGGAAGGATGGCCGCTTCCAGTCTGAGTGGGTCGGGCCTTGTGTCATCGACTACATTA
CAGAAAGTGGATGTGCTGTCCTCAGAGATAACACGGGAACCAGACTCAAACGACCTATCAAAATGTCCCA
CCTTAGGCCCTATGTGAGAGAGTCCAGTGAGCAGGACAGTCTTTATCTCTTGCAAGGTTCGATAGTGGCA
GATCACGACTACATTGGATTACCTGAGATCCCAGTTGGAACATACCAGGCAAATATTCTGGTAGAAGATG
CAACTATTGGGATAGCTGATAATGAACTATTGATATCAAGCAAGGATCATGAACTCTTAGAATATAGAAA
TTCCAAAATCTCTGCATTGGTAGAAGACCACAGTTCTCTTGAGAAACAGACTTTTAGCCTACTGGATTCT
TCAAATCAAGTTCTCGAGTACTTAAGTTAG

Translation (429 aa):
MVRSGKNGDLHLKQIAYYKRTGEYHPTTLPSERSGIRRAAKKFVFKEKKLFYVGKDRKQNRLVVVSEEEK
KKVLRECHENGPGVHHGISRTLTLVESGYYWTSVTNDVKQWKIIMDQRDEFIEQINVELYRLFGAKEIVI
SRASGSVNPAENTPSTIKTFLSKHCADHPNSWDEHLPALSFAFNVTHLEPNKNTPYFQMFNRNPCVLECP
PEEGSEGTSVFARIVAAIREADGVVENKTPASSQMENNNSDELSKSKVVKKKAKQLNPFHLKVGHEVLRQ
RKNWWKDGRFQSEWVGPCVIDYITESGCAVLRDNTGTRLKRPIKMSHLRPYVRESSEQDSLYLLQGSIVA
DHDYIGLPEIPVGTYQANILVEDATIGIADNELLISSKDHELLEYRNSKISALVEDHSSLEKQTFSLLDS
SNQVLEYLS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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