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Report for CCDS12454.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12454.1 Public Homo sapiens 19 HAMP 24 110 108 CCDS HistoryNCBI Gene:57817Re-query CCDS DB by CCDS ID:12454.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12454.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000222304.5 ENSP00000222304.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000222304.5Link to Ensembl Protein Viewer:ENSP00000222304.2Re-query CCDS DB by Nucleotide ID:ENST00000222304Re-query CCDS DB by Protein ID:ENSP00000222304
Original member Current member EBI ENST00000598398.5 ENSP00000471894.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000598398.5Link to Ensembl Protein Viewer:ENSP00000471894.1Re-query CCDS DB by Nucleotide ID:ENST00000598398Re-query CCDS DB by Protein ID:ENSP00000471894
Original member Current member NCBI NM_021175.4 NP_066998.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021175.4Link to Protein Sequence:NP_066998.1Re-query CCDS DB by Nucleotide ID:NM_021175Re-query CCDS DB by Protein ID:NP_066998Link to BLAST:NP_066998.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066998.1 84 P81172 84 100% 0 0

Chromosomal Locations for CCDS 12454.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 35282578 35282667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35284789 35284848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35284938 35285042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (255 nt):
ATGGCACTGAGCTCCCAGATCTGGGCCGCTTGCCTCCTGCTCCTCCTCCTCCTCGCCAGCCTGACCAGTG
GCTCTGTTTTCCCACAACAGACGGGACAACTTGCAGAGCTGCAACCCCAGGACAGAGCTGGAGCCAGGGC
CAGCTGGATGCCCATGTTCCAGAGGCGAAGGAGGCGAGACACCCACTTCCCCATCTGCATTTTCTGCTGC
GGCTGCTGTCATCGATCAAAGTGTGGGATGTGCTGCAAGACGTAG

Translation (84 aa):
MALSSQIWAACLLLLLLLASLTSGSVFPQQTGQLAELQPQDRAGARASWMPMFQRRRRRDTHFPICIFCC
GCCHRSKCGMCCKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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