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Report for CCDS55482.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55482.1 Public Homo sapiens X WDR44 24 110 108 CCDS HistoryNCBI Gene:54521Re-query CCDS DB by CCDS ID:55482.1Re-query CCDS DB by GeneID:54521See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55482.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371825.7 ENSP00000360890.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371825.7Link to Ensembl Protein Viewer:ENSP00000360890.3Re-query CCDS DB by Nucleotide ID:ENST00000371825Re-query CCDS DB by Protein ID:ENSP00000360890
Original member Current member NCBI NM_001184965.2 NP_001171894.1 Accepted alive Link to Nucleotide Sequence:NM_001184965.2Link to Protein Sequence:NP_001171894.1Re-query CCDS DB by Nucleotide ID:NM_001184965Re-query CCDS DB by Protein ID:NP_001171894Link to BLAST:NP_001171894.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171894.1 905 Q5JSH3-2 905 100% 0 0

Chromosomal Locations for CCDS 55482.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 118346504 118346580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118378419 118378452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118387340 118387414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118392632 118393271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118394055 118394185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118395249 118395344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118396970 118397106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118398387 118398470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118404338 118404444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118406875 118407026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118409489 118409627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118410895 118410959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118432781 118432894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118436702 118436824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118441368 118441559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118442244 118442345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118442565 118442680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118443584 118443687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118444360 118444494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118448893 118448987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2718 nt):
ATGGCGTCGGAAAGCGACACCGAGGAATTCTATGATGCCCCTGAAGATGTGCACCTAGGGGGCGGCTACC
CCGTGGGGTCTCCAGGAAAAGTTGGGCTTTCAACATTCAAGGAAACAGAGAACACTGCATACAAAGTTGG
AAATGAGTCCCCTGTACAAGAATTGAAACAAGATGTGTCTAAAAAGATTATTGAAAGTATTATTGAGGAG
AGTCAGAAAGTACTACAGCTTGAAGATGACTCTTTGGATTCCAAAGGAAAAGAACTCTCTGATCAAGCTA
CTGCCAGTCCTATTGTGGCTAGAACAGATCTGAGCAATATACCCGGACTGTTAGCCATAGATCAAGTACT
ACCGGAAGAATCCCAAAAGGCAGAGAGTCAGAATACATTTGAAGAGACTGAATTAGAATTAAAAAAATGC
TTTCCTTCTGATGAAACCTGTGAGAAACCAGTAGATGAAACCACGAAGTTAACTCAAACAAGTTCAACTG
AGCAGCTTAATGTGCTTGAAACTGAAACAGAAGTATTGAACAAGGAAGCAGTGGAAGTCAAAGGAGGTGG
TGATGTTTTAGAGCCTGTGTCCTCAGACTCCTTATCTACTAAAGATTTTGCCGCTGTGGAAGAAGTGGCC
CCTGCCAAACCCCCAAGACACCTTACTCCAGAGCCTGATATAGTGGCTAGTACAAAGAAGCCTGTTCCAG
CACGCCCACCTCCTCCAACTAATTTCCCACCTCCTAGACCCCCACCTCCTTCTCGACCTGCTCCACCACC
AAGAAAAAGGAAAAGCGAATTGGAATTTGAGACTCTGAAAACTCCTGATATAGATGTTCCCAAAGAGAAT
ATTACGTCTGATTCTCTCCTAACCGCAAGCATGGCTTCAGAAAGTACGGTTAAGGATTCTCAGCCTTCTC
TTGATTTGGCAAGTGCTACCAGTGGAGATAAAATAGTTACCGCCCAGGAAAATGGAAAAGCACCTGATGG
GCAGACTGTAGCAGGTGAAGTGATGGGCCCTCAGAGACCTAGATCCAACTCTGGGAGAGAGCTTACTGAT
GAGGAAATTTTAGCCAGTGTAATGATTAAGAACCTGGATACTGGAGAAGAAATACCTTTGAGTCTTGCAG
AAGAGAAACTACCAACAGGCATTAATCCTCTCACTCTACACATCATGAGAAGGACAAAAGAATATGTAAG
TAATGACGCGGCACAGTCAGATGATGAAGAGAAGTTACAGTCTCAGCCAACAGATACTGATGGTGGAAGG
TTAAAACAGAAAACGACTCAACTAAAGAAGTTTCTTGGAAAATCAGTAAAGAGAGCAAAGCACCTTGCTG
AGGAATATGGTGAACGTGCTATAAATAAAGTTAAAAGTGTTAGAGATGAAGTGTTTCATACTGATCAAGA
TGATCCTTCATCAAGTGATGATGAAGGAATGCCATACACAAGACCAGTTAAATTCAAAGCAGCACACGGT
TTCAAAGGACCTTATGATTTTGATCAGATCAAAGTGGTGCAAGATCTTAGTGGTGAACATATGGGAGCTG
TTTGGACCATGAAATTTTCTCACTGTGGCCGATTACTTGCCTCAGCTGGACAAGACAATGTAGTGAGAAT
ATGGGCTTTAAAAAATGCTTTTGACTATTTCAACAATATGCGAATGAAATACAATACTGAAGGACGTGTG
TCCCCATCACCCTCTCAGGAAAGTCTAAGTTCATCAAAATCGGATACAGATACAGGGGTATGCAGTGGAA
CTGATGAAGACCCTGATGATAAAAACGCACCCTTTCGGCAACGGCCATTTTGCAAATATAAAGGACATAC
TGCTGATCTCCTTGATCTTTCATGGTCTAAAAACTACTTTCTTCTTTCTTCTTCAATGGATAAAACAGTC
AGATTATGGCACATTTCTCGAAGAGAATGCCTTTGCTGTTTTCAACATATAGATTTTGTCACTGCCATAG
CTTTTCATCCAAGAGATGACAGGTATTTTCTAAGTGGGTCTTTGGATGGAAAGCTCCGCCTTTGGAACAT
ACCTGACAAAAAAGTGGCTTTGTGGAATGAAGTAGATGGTCAGACAAAATTGATCACAGCTGCAAATTTC
TGTCAGAATGGCAAATATGCAGTGATTGGGACATATGATGGCAGATGTATTTTCTATGATACAGAGCATT
TGAAATACCATACACAAATACATGTCCGATCTACTAGAGGGCGCAACAAGGTTGGAAGAAAAATTACTGG
CATTGAGCCTTTACCTGGAGAAAATAAGATATTGGTAACCTCAAATGACTCCAGAATCAGACTATATGAT
TTGAGAGATTTGTCACTATCCATGAAGTATAAGGGTTACGTCAATAGCAGCAGCCAGATCAAAGCAAGTT
TCAGTGGTTCAGAAGATAAGTATGTTTATATCTGGAGTACCTACCATGACCTAAGCAAGTTTACTTCAGT
CAGGAGAGATCGTAATGACTTCTGGGAAGGTATTAAAGCCCACAATGCAGTTGTTACATCAGCCATCTTT
GCACCAAACCCAAGTTTGATGTTATCTTTGGATGTGCAATCTGAAAAATCAGAAGGGAACGAGAAAAGTG
AAGATGCTGAAGTTTTGGATGCCACACCTTCTGGTATTATGAAGACAGATAACACAGAAGTTCTTCTCTC
TGCTGACTTCACTGGAGCAATCAAAGTGTTTGTTAATAAAAGAAAAAATGTATCTTAA

Translation (905 aa):
MASESDTEEFYDAPEDVHLGGGYPVGSPGKVGLSTFKETENTAYKVGNESPVQELKQDVSKKIIESIIEE
SQKVLQLEDDSLDSKGKELSDQATASPIVARTDLSNIPGLLAIDQVLPEESQKAESQNTFEETELELKKC
FPSDETCEKPVDETTKLTQTSSTEQLNVLETETEVLNKEAVEVKGGGDVLEPVSSDSLSTKDFAAVEEVA
PAKPPRHLTPEPDIVASTKKPVPARPPPPTNFPPPRPPPPSRPAPPPRKRKSELEFETLKTPDIDVPKEN
ITSDSLLTASMASESTVKDSQPSLDLASATSGDKIVTAQENGKAPDGQTVAGEVMGPQRPRSNSGRELTD
EEILASVMIKNLDTGEEIPLSLAEEKLPTGINPLTLHIMRRTKEYVSNDAAQSDDEEKLQSQPTDTDGGR
LKQKTTQLKKFLGKSVKRAKHLAEEYGERAINKVKSVRDEVFHTDQDDPSSSDDEGMPYTRPVKFKAAHG
FKGPYDFDQIKVVQDLSGEHMGAVWTMKFSHCGRLLASAGQDNVVRIWALKNAFDYFNNMRMKYNTEGRV
SPSPSQESLSSSKSDTDTGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTV
RLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDKKVALWNEVDGQTKLITAANF
CQNGKYAVIGTYDGRCIFYDTEHLKYHTQIHVRSTRGRNKVGRKITGIEPLPGENKILVTSNDSRIRLYD
LRDLSLSMKYKGYVNSSSQIKASFSGSEDKYVYIWSTYHDLSKFTSVRRDRNDFWEGIKAHNAVVTSAIF
APNPSLMLSLDVQSEKSEGNEKSEDAEVLDATPSGIMKTDNTEVLLSADFTGAIKVFVNKRKNVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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