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Report for CCDS11209.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11209.1 Public Homo sapiens 17 SLC47A1 24 110 108 CCDS HistoryNCBI Gene:55244Re-query CCDS DB by CCDS ID:11209.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11209.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000270570.8 ENSP00000270570.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000270570.8Link to Ensembl Protein Viewer:ENSP00000270570.4Re-query CCDS DB by Nucleotide ID:ENST00000270570Re-query CCDS DB by Protein ID:ENSP00000270570
Original member Current member NCBI NM_018242.3 NP_060712.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018242.3Link to Protein Sequence:NP_060712.2Re-query CCDS DB by Nucleotide ID:NM_018242Re-query CCDS DB by Protein ID:NP_060712Link to BLAST:NP_060712.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060712.2 570 Q96FL8-1 570 100% 0 0

Chromosomal Locations for CCDS 11209.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 19533940 19534074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19542393 19542494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19546435 19546503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19547985 19548133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19549635 19549677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19551424 19551468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19555212 19555309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19555593 19555690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19555796 19555909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19555995 19556062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19560188 19560296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19560418 19560493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19566790 19566859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19567096 19567228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19571478 19571572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19572780 19572861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19577327 19577553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1713 nt):
ATGGAAGCTCCTGAGGAGCCCGCGCCAGTGCGCGGAGGCCCGGAGGCCACCCTTGAGGTCCGTGGGTCGC
GCTGCTTGCGGCTGTCCGCCTTCCGAGAAGAGCTGCGGGCGCTCTTGGTCCTGGCTGGCCCCGCGTTCTT
GGTTCAGCTGATGGTGTTCCTGATCAGCTTCATAAGCTCCGTGTTCTGTGGCCACCTGGGCAAGCTGGAG
CTGGATGCAGTCACGCTGGCAATCGCGGTTATCAATGTCACTGGTGTCTCAGTGGGATTCGGCTTATCTT
CTGCCTGTGACACCCTCATCTCCCAGACGTACGGGAGCCAGAACCTGAAGCACGTGGGCGTGATCCTGCA
GCGGAGTGCGCTCGTCCTGCTCCTCTGCTGCTTCCCCTGCTGGGCGCTCTTTCTCAACACCCAGCACATC
CTGCTGCTCTTCAGGCAGGACCCAGATGTGTCCAGGCTTACCCAGACCTATGTCACGATCTTCATTCCAG
CTCTTCCTGCAACCTTTCTTTATATGTTACAAGTTAAATATTTGCTCAACCAGGGAATTGTACTGCCCCA
GATCGTAACTGGAGTTGCAGCCAACCTTGTCAATGCCCTCGCCAACTATCTGTTTCTCCATCAACTGCAT
CTTGGGGTGATAGGCTCTGCACTGGCAAACTTGATTTCCCAGTACACCCTGGCTCTACTCCTCTTTCTCT
ACATCCTCGGGAAAAAACTGCATCAAGCTACATGGGGAGGCTGGTCCCTCGAGTGCCTGCAGGACTGGGC
CTCCTTCCTCCGCCTGGCCATCCCCAGCATGCTCATGCTGTGCATGGAGTGGTGGGCCTATGAGGTCGGG
AGCTTCCTCAGTGGCATCCTCGGCATGGTGGAGCTGGGCGCTCAGTCCATCGTGTATGAACTGGCCATCA
TTGTGTACATGGTCCCTGCAGGCTTCAGTGTGGCTGCCAGTGTCCGGGTAGGAAACGCTCTGGGTGCTGG
AGACATGGAGCAGGCACGGAAGTCCTCTACCGTTTCCCTGCTGATTACAGTGCTCTTTGCTGTAGCCTTC
AGTGTCCTGCTGTTAAGCTGTAAGGATCACGTGGGGTACATTTTTACTACCGACCGAGACATCATTAATC
TGGTGGCTCAGGTGGTTCCAATTTATGCTGTTTCCCACCTCTTTGAAGCTCTTGCTTGCACGAGTGGTGG
TGTTCTGAGGGGGAGTGGAAATCAGAAGGTTGGAGCCATTGTGAATACCATTGGGTACTATGTGGTTGGC
CTCCCCATCGGGATCGCGCTGATGTTTGCAACCACACTTGGAGTGATGGGTCTGTGGTCAGGGATCATCA
TCTGTACAGTCTTTCAAGCTGTGTGTTTTCTAGGCTTTATTATTCAGCTAAATTGGAAAAAAGCCTGTCA
GCAGGCTCAGGTACACGCCAATTTGAAAGTAAACAACGTGCCTCGGAGTGGGAATTCTGCTCTCCCTCAG
GATCCGCTTCACCCAGGGTGCCCTGAAAACCTTGAAGGAATTTTAACGAACGATGTTGGAAAGACAGGCG
AGCCTCAGTCAGATCAGCAGATGCGCCAAGAAGAACCTTTGCCGGAACATCCACAGGACGGCGCTAAATT
GTCCAGGAAACAGCTGGTGCTGCGGCGAGGGCTTCTGCTCCTGGGGGTCTTCTTAATCTTGCTGGTGGGG
ATTTTAGTGAGATTCTATGTCAGAATTCAGTGA

Translation (570 aa):
MEAPEEPAPVRGGPEATLEVRGSRCLRLSAFREELRALLVLAGPAFLVQLMVFLISFISSVFCGHLGKLE
LDAVTLAIAVINVTGVSVGFGLSSACDTLISQTYGSQNLKHVGVILQRSALVLLLCCFPCWALFLNTQHI
LLLFRQDPDVSRLTQTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLH
LGVIGSALANLISQYTLALLLFLYILGKKLHQATWGGWSLECLQDWASFLRLAIPSMLMLCMEWWAYEVG
SFLSGILGMVELGAQSIVYELAIIVYMVPAGFSVAASVRVGNALGAGDMEQARKSSTVSLLITVLFAVAF
SVLLLSCKDHVGYIFTTDRDIINLVAQVVPIYAVSHLFEALACTSGGVLRGSGNQKVGAIVNTIGYYVVG
LPIGIALMFATTLGVMGLWSGIIICTVFQAVCFLGFIIQLNWKKACQQAQVHANLKVNNVPRSGNSALPQ
DPLHPGCPENLEGILTNDVGKTGEPQSDQQMRQEEPLPEHPQDGAKLSRKQLVLRRGLLLLGVFLILLVG
ILVRFYVRIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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