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Report for CCDS52888.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52888.1 Public Mus musculus 9 Chst2 23 108 98 CCDS HistoryNCBI Gene:54371Re-query CCDS DB by CCDS ID:52888.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52888.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036267.7 ENSMUSP00000040775.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036267.7Link to Ensembl Protein Viewer:ENSMUSP00000040775.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000036267Re-query CCDS DB by Protein ID:ENSMUSP00000040775
Original member Current member NCBI NM_018763.2 NP_061233.2 Accepted alive Link to Nucleotide Sequence:NM_018763.2Link to Protein Sequence:NP_061233.2Re-query CCDS DB by Nucleotide ID:NM_018763Re-query CCDS DB by Protein ID:NP_061233Link to BLAST:NP_061233.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061233.2 530 Q80WV3 530 100% 0 0

Chromosomal Locations for CCDS 52888.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 95404699 95406291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGAGCCGCAGCTCGCCGCGAGCTCTGCCCCCCGGTGCGCTTCCCCGGCCGCTGCCGGCCGCGCCTGCCG
CCGTGCAGCGGGCCCTGCTCCCGCCGTGGCCCCGGCGCGCAGGACGCCGCTGGCCTGCGTCCCCGCTCGG
GATGAAGGTATTTCGCAGGAAGGCGCTGGTGCTGTGCGCGGGCTATGCACTGCTACTGGTGCTCACGATG
CTCAACCTCTTGGACTACAAGTGGCATAAAGAGCCGCTGCAGCAGTGCAACCCCGACGGGCCTCTGGGTG
CCGCGGTAGGGGCGGCCGGGGCCGGCTGGGGACGGCCGGGGTCGCCTCCTGCAGCGCCACCCCGCGCTCA
CTCTCGCATGGACCCCCGCACCCCGTACCGCCCTCCTGCCGCGGGCGTGGGGGCAGTTCCCGCAGCCGCG
GCTGGGAGTGCAGGAGCTGCGGCCTCTCTGGGCAATGCTACTCGAGGCACCAGGGGTGGAGGGGACAAGC
GGCAGTTGGTGTATGTGTTCACCACGTGGCGCTCGGGCTCGTCCTTCTTCGGTGAGCTCTTCAACCAGAA
CCCTGAGGTGTTCTTCCTCTATGAGCCTGTGTGGCACGTGTGGCAAAAACTGTACCCCGGGGACGCCGTT
TCCCTGCAGGGGGCAGCGCGGGACATGCTGAGCGCTCTCTACCGCTGCGATCTTTCGGTTTTCCAGCTGT
ATAGCCCCGCAGGCAGTGGGGGGCGCAACCTCACCACTCTGGGCATCTTTGGGGCAGCCACTAACAAGGT
GGTATGCTCCTCGCCACTCTGTCCTGCCTACCGCAAGGAGGTCGTCGGACTGGTGGACGACCGCGTGTGC
AAAAAGTGCCCACCTCAACGCCTGGCACGCTTCGAGGAGGAGTGTCGCAAGTACCGCACGCTGGTTATCA
AGGGCGTGCGGGTCTTCGATGTGGCTGTGTTGGCGCCGCTGCTTAAAGATCCAGCCTTGGACCTCAAGGT
CATCCACCTAGTACGTGATCCTCGTGCTGTTGCCAGCTCCCGCATCCGCTCGCGTCACGGCCTCATCCGG
GAAAGCCTACAGGTGGTGCGAAGCCGGGATCCAAGAGCCCACCGCATGCCCTTCCTGGAGGCTGCTGGCC
ACAAGCTTGGTGCCAAGAAGGAGGGTATGGGTGGCCCAGCAGACTACCACGCTCTGGGTGCAATGGAGGT
CATCTGCAACAGTATGGCCAAGACGCTGCAAACAGCCCTGCAGCCTCCTGACTGGCTGCAGGGACACTAC
TTGGTGGTGAGGTACGAGGATCTGGTGGGAGACCCCGTTAAGACCCTACGGAGGGTATATGACTTTGTGG
GGCTGCTGGTGAGTCCCGAAATGGAGCAGTTTGCCCTGAACATGACCAGTGGTTCGGGCTCCTCCTCCAA
GCCTTTCGTGGTGTCAGCTCGCAATGCCACTCAGGCCGCCAATGCCTGGCGGACCGCGCTCACCTTCCAG
CAGATCAAACAGGTGGAGGAGTTTTGCTACCAGCCCATGGCCGTGCTGGGCTATGAGCGGGTTAACAGTC
CTGAGGAGGTCAAAGACCTCAGCAAGACCTTGCTCAGGAAGCCCCGGCTTTGA

Translation (530 aa):
MSRSSPRALPPGALPRPLPAAPAAVQRALLPPWPRRAGRRWPASPLGMKVFRRKALVLCAGYALLLVLTM
LNLLDYKWHKEPLQQCNPDGPLGAAVGAAGAGWGRPGSPPAAPPRAHSRMDPRTPYRPPAAGVGAVPAAA
AGSAGAAASLGNATRGTRGGGDKRQLVYVFTTWRSGSSFFGELFNQNPEVFFLYEPVWHVWQKLYPGDAV
SLQGAARDMLSALYRCDLSVFQLYSPAGSGGRNLTTLGIFGAATNKVVCSSPLCPAYRKEVVGLVDDRVC
KKCPPQRLARFEEECRKYRTLVIKGVRVFDVAVLAPLLKDPALDLKVIHLVRDPRAVASSRIRSRHGLIR
ESLQVVRSRDPRAHRMPFLEAAGHKLGAKKEGMGGPADYHALGAMEVICNSMAKTLQTALQPPDWLQGHY
LVVRYEDLVGDPVKTLRRVYDFVGLLVSPEMEQFALNMTSGSGSSSKPFVVSARNATQAANAWRTALTFQ
QIKQVEEFCYQPMAVLGYERVNSPEEVKDLSKTLLRKPRL


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 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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