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Report for CCDS48244.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48244.1 Public Mus musculus 1 Npas2 23 108 98 CCDS HistoryNCBI Gene:18143Re-query CCDS DB by CCDS ID:48244.1Re-query CCDS DB by GeneID:18143See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48244.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056815.8 ENSMUSP00000054719.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056815.8Link to Ensembl Protein Viewer:ENSMUSP00000054719.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000056815Re-query CCDS DB by Protein ID:ENSMUSP00000054719
Original member Current member NCBI NM_008719.2 NP_032745.2 Accepted alive Link to Nucleotide Sequence:NM_008719.2Link to Protein Sequence:NP_032745.2Re-query CCDS DB by Nucleotide ID:NM_008719Re-query CCDS DB by Protein ID:NP_032745Link to BLAST:NP_032745.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032745.2 816 P97460 816 99.8774% 0 1

Chromosomal Locations for CCDS 48244.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 39263344 39263375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39287468 39287616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39292687 39292778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39300644 39300733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39311841 39311961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39312955 39313068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39324440 39324558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39325296 39325378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39326088 39326194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39328307 39328454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39330937 39331021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39333810 39333951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39334703 39334812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39335995 39336096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39338053 39338199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39345269 39345466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39347491 39347681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39348432 39348524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39359649 39359823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39361855 39362007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2451 nt):
ATGGACGAAGATGAGAAGGATAGAGCAAAGAGAGCCTCTCGAAATAAGTCTGAGAAGAAGCGTCGGGACC
AGTTCAATGTTCTCATCAAAGAGCTCAGCTCCATGCTCCCTGGTAACACTCGGAAAATGGACAAAACCAC
CGTGCTGGAGAAGGTCATCGGATTCTTGCAGAAACACAATGAAGTCTCAGCACAAACAGAAATCTGTGAC
ATCCAGCAGGACTGGAAGCCATCATTCCTCAGTAACGAAGAATTCACCCAGCTGATGTTGGAGGCATTAG
ATGGCTTCGTCATCGTCGTGACAACAGACGGCAGCATCATCTATGTGTCCGACAGTATCACACCTCTCCT
TGGACATTTACCGGCGGATGTCATGGATCAGAACTTGTTAAATTTCCTTCCAGAGCAAGAACATTCCGAA
GTTTATAAAATCCTTTCTTCCCATATGCTTGTGACGGATTCCCCCTCCCCAGAATTCCTAAAATCTGACA
ACGATTTAGAGTTTTATTGCCATCTTCTCAGAGGCAGCTTGAACCCAAAGGAATTTCCAACTTACGAATA
TATAAAATTTGTAGGAAATTTTCGCTCTTACAACAATGTGCCTAGCCCCTCCTGTAATGGCTTTGACAAC
ACCCTTTCAAGACCCTGCCATGTACCCCTAGGAAAGGACGTCTGCTTCATCGCCACCGTGCGCCTGGCAA
CCCCGCAGTTCTTAAAGGAAATGTGTGTAGCTGACGAACCTTTAGAGGAATTCACTTCGAGGCATAGCTT
GGAATGGAAATTTTTATTTCTGGATCACAGAGCTCCTCCAATCATAGGATACCTGCCCTTTGAAGTACTT
GGCACCTCAGGCTACGACTACTACCACATTGATGACCTGGAGCTCCTGGCCAGGTGCCACCAGCATCTGA
TGCAGTTTGGCAAAGGGAAGTCGTGCTGTTACCGGTTTCTAACCAAAGGGCAGCAGTGGATTTGGTTGCA
AACCCACTACTACATCACCTACCACCAATGGAACTCCAAGCCTGAGTTCATCGTATGCACACACTCAGTG
GTCAGTTACGCAGATGTTCGAGTGGAAAGGAGACAGGAGCTGGCTCTGGAAGACCCACCCACAGAGGCCA
TGCACCCCTCTGCAGTGAAGGAAAAGGACTCAAGCCTAGAGCCTCCACAGCCCTTTAATGCACTTGACAT
GGGCGCCTCAGGTCTTCCCAGCAGCCCTTCTCCATCAGCCTCCTCAAGGAGTTCCCACAAGTCCTCACAC
ACAGCCATGTCAGAACCCACCTCCACTCCAACCAAGCTGATGGCTGAGAACAGCACCACAGCTTTGCCAA
GACCGGCCACCCTACCCCAGGAGTTACCAGTGCAGGGGCTCAGCCAGGCAGCCACAATGCCGACTGCTCT
GCATTCCTCAGCCTCCTGCGACCTCACAAAGCAACTCCTGCTGCAGAGCCTGCCTCAGACCGGCTTGCAG
AGTCCACCTGCTCCAGTGACACAGTTTTCAGCACAATTCAGCATGTTCCAGACCATTAAAGACCAACTGG
AGCAGAGGACACGGATCCTGCAGGCCAACATTCGGTGGCAGCAGGAAGAGCTTCATAAGATCCAGGAACA
ACTCTGCCTGGTCCAGGACTCCAACGTCCAGATGTTTCTGCAGCAGCCAGCTGTGTCCCTGAGCTTCAGC
AGTACGCAGCGACCAGCAGCTCAGCAGCAGCTGCAGCAAAGGCCCGCCGCACCGTCTCAGCCCCAGCTTG
TGGTCAACACTCCACTGCAGGGGCAGATCACATCCACCCAAGTCACAAACCAGCACCTGCTCCGAGAATC
GAATGTGATATCCGCCCAGGGTCCAAAGCCAATGAGAAGTTCCCAGCTGCTGCCTGCCAGCGGCCGTTCA
CTGAGCAGCCTGCCATCCCAGTTTAGCAGTACAGCTTCCGTGCTCCCGCCTGGCCTGAGCCTCACCACGA
TTGCTCCCACCCCTCAGGATGACAGCCAGTGCCAGCCCAGCCCTGACTTCGGCCATGATCGGCAGCTCAG
GCTGTTGCTGAGCCAGCCCATCCAGCCTATGATGCCTGGGTCCTGCGATGCCAGGCAGCCCTCAGAAGTC
AGCAGAACTGGACGGCAAGTCAAGTATGCACAGAGCCAAGTGATGTTTCCAAGTCCAGACTCACACCCTA
CCAACAGCAGCGCATCCACCCCGGTCCTGCTCATGGGGCAGGCAGTACTCCATCCCAGCTTCCCTGCTTC
CCGGCCATCGCCACTGCAGCCAGCACAGGCACAGCAGCAGCCACCACCCTATTTGCAGGCACCAACATCT
CTGCACAGTGAGCAGCCGGACTCGCTCCTTCTCTCCACCTTCTCCCAGCAGCCGGGAACCCTGGGCTATG
CAGCCACACAGTCTACACCTCCGCAACCCCCACGCCCCTCCCGCAGGGTCAGCCGGCTGTCAGAGTCCTA
A

Translation (816 aa):
MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKMDKTTVLEKVIGFLQKHNEVSAQTEICD
IQQDWKPSFLSNEEFTQLMLEALDGFVIVVTTDGSIIYVSDSITPLLGHLPADVMDQNLLNFLPEQEHSE
VYKILSSHMLVTDSPSPEFLKSDNDLEFYCHLLRGSLNPKEFPTYEYIKFVGNFRSYNNVPSPSCNGFDN
TLSRPCHVPLGKDVCFIATVRLATPQFLKEMCVADEPLEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVL
GTSGYDYYHIDDLELLARCHQHLMQFGKGKSCCYRFLTKGQQWIWLQTHYYITYHQWNSKPEFIVCTHSV
VSYADVRVERRQELALEDPPTEAMHPSAVKEKDSSLEPPQPFNALDMGASGLPSSPSPSASSRSSHKSSH
TAMSEPTSTPTKLMAENSTTALPRPATLPQELPVQGLSQAATMPTALHSSASCDLTKQLLLQSLPQTGLQ
SPPAPVTQFSAQFSMFQTIKDQLEQRTRILQANIRWQQEELHKIQEQLCLVQDSNVQMFLQQPAVSLSFS
STQRPAAQQQLQQRPAAPSQPQLVVNTPLQGQITSTQVTNQHLLRESNVISAQGPKPMRSSQLLPASGRS
LSSLPSQFSSTASVLPPGLSLTTIAPTPQDDSQCQPSPDFGHDRQLRLLLSQPIQPMMPGSCDARQPSEV
SRTGRQVKYAQSQVMFPSPDSHPTNSSASTPVLLMGQAVLHPSFPASRPSPLQPAQAQQQPPPYLQAPTS
LHSEQPDSLLLSTFSQQPGTLGYAATQSTPPQPPRPSRRVSRLSES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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