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Report for CCDS10166.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10166.1 Public Homo sapiens 15 LIPC 24 110 108 CCDS HistoryNCBI Gene:3990Re-query CCDS DB by CCDS ID:10166.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10166.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299022.10 ENSP00000299022.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000299022.10Link to Ensembl Protein Viewer:ENSP00000299022.5Re-query CCDS DB by Nucleotide ID:ENST00000299022Re-query CCDS DB by Protein ID:ENSP00000299022
Original member Current member EBI ENST00000356113.10 ENSP00000348425.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356113.10Link to Ensembl Protein Viewer:ENSP00000348425.6Re-query CCDS DB by Nucleotide ID:ENST00000356113Re-query CCDS DB by Protein ID:ENSP00000348425
Original member Current member NCBI NM_000236.3 NP_000227.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000236.3Link to Protein Sequence:NP_000227.2Re-query CCDS DB by Nucleotide ID:NM_000236Re-query CCDS DB by Protein ID:NP_000227Link to BLAST:NP_000227.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000227.2 499 P11150 499 100% 0 0

Chromosomal Locations for CCDS 10166.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 58432033 58432120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58538333 58538517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58541785 58541967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58542534 58542651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58545742 58545975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58548330 58548572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58560864 58560981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58563505 58563723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 58568716 58568827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGGACACAAGTCCCCTGTGTTTCTCCATTCTGTTGGTTTTATGCATCTTTATCCAATCAAGTGCCCTTG
GACAAAGCCTGAAACCAGAGCCATTTGGAAGAAGAGCTCAAGCTGTTGAAACAAACAAAACGCTGCATGA
GATGAAGACCAGATTCCTGCTCTTTGGAGAAACCAATCAGGGCTGTCAGATTCGAATCAATCATCCGGAC
ACGTTACAGGAGTGCGGCTTCAACTCCTCCCTGCCTCTGGTGATGATAATCCACGGGTGGTCGGTGGACG
GCGTGCTAGAAAACTGGATCTGGCAGATGGTGGCCGCGCTGAAGTCTCAGCCGGCCCAGCCAGTGAACGT
GGGGCTGGTGGACTGGATCACCCTGGCCCACGACCACTACACCATCGCCGTCCGCAACACCCGCCTTGTG
GGCAAGGAGGTCGCGGCTCTTCTCCGGTGGCTGGAGGAATCTGTGCAACTCTCTCGAAGCCATGTTCACC
TAATTGGGTACAGCCTGGGTGCACACGTGTCAGGATTTGCCGGCAGTTCCATCGGTGGAACGCACAAGAT
TGGGAGAATCACAGGGCTGGATGCCGCGGGACCTTTGTTTGAGGGAAGTGCCCCCAGCAATCGTCTTTCT
CCAGATGATGCCAATTTTGTGGATGCCATTCATACCTTTACCCGGGAGCACATGGGCCTGAGCGTGGGCA
TCAAACAGCCCATAGGACACTATGACTTCTATCCCAACGGGGGCTCCTTCCAGCCTGGCTGCCACTTCCT
AGAGCTCTACAGACATATTGCCCAGCACGGCTTCAATGCCATCACCCAGACCATAAAATGCTCCCACGAG
CGATCGGTGCACCTTTTCATCGACTCCTTGCTGCACGCCGGCACGCAGAGCATGGCCTACCCGTGTGGTG
ACATGAACAGCTTCAGCCAGGGCCTGTGCCTGAGCTGCAAGAAGGGCCGCTGCAACACGCTGGGCTACCA
CGTCCGCCAGGAGCCGCGGAGCAAGAGCAAGAGGCTCTTCCTCGTAACGCGAGCCCAGTCCCCCTTCAAA
GTTTATCATTACCAGTTCAAGATCCAGTTCATCAACCAAACTGAGACACCAATACAAACAACTTTTACCA
TGTCACTACTCGGAACAAAAGAGAAAATGCAGAAAATTCCCATCACTCTGGGCAAAGGAATTGCTAGTAA
TAAAACGTATTCCTTTCTTATCACGCTGGATGTGGATATCGGCGAGCTGATCATGATCAAGTTCAAGTGG
GAAAACAGTGCAGTGTGGGCCAATGTCTGGGACACGGTCCAGACCATCATCCCATGGAGCACAGGGCCGC
GCCACTCAGGCCTCGTTCTGAAGACGATCAGAGTCAAAGCAGGAGAAACCCAGCAAAGAATGACATTTTG
TTCAGAAAACACAGATGACCTACTACTTCGCCCAACCCAGGAAAAAATCTTCGTGAAATGTGAAATAAAG
TCTAAAACATCAAAGCGAAAGATCAGATGA

Translation (499 aa):
MDTSPLCFSILLVLCIFIQSSALGQSLKPEPFGRRAQAVETNKTLHEMKTRFLLFGETNQGCQIRINHPD
TLQECGFNSSLPLVMIIHGWSVDGVLENWIWQMVAALKSQPAQPVNVGLVDWITLAHDHYTIAVRNTRLV
GKEVAALLRWLEESVQLSRSHVHLIGYSLGAHVSGFAGSSIGGTHKIGRITGLDAAGPLFEGSAPSNRLS
PDDANFVDAIHTFTREHMGLSVGIKQPIGHYDFYPNGGSFQPGCHFLELYRHIAQHGFNAITQTIKCSHE
RSVHLFIDSLLHAGTQSMAYPCGDMNSFSQGLCLSCKKGRCNTLGYHVRQEPRSKSKRLFLVTRAQSPFK
VYHYQFKIQFINQTETPIQTTFTMSLLGTKEKMQKIPITLGKGIASNKTYSFLITLDVDIGELIMIKFKW
ENSAVWANVWDTVQTIIPWSTGPRHSGLVLKTIRVKAGETQQRMTFCSENTDDLLLRPTQEKIFVKCEIK
SKTSKRKIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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