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Report for CCDS37157.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37157.1 Public Mus musculus 15 Septin3 23 108 98 CCDS HistoryNCBI Gene:24050Re-query CCDS DB by CCDS ID:37157.1Re-query CCDS DB by GeneID:24050See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37157.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023095.13 ENSMUSP00000023095.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023095.13Link to Ensembl Protein Viewer:ENSMUSP00000023095.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023095Re-query CCDS DB by Protein ID:ENSMUSP00000023095
Original member Current member EBI ENSMUST00000116423.2 ENSMUSP00000112124.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116423.2Link to Ensembl Protein Viewer:ENSMUSP00000112124.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000116423Re-query CCDS DB by Protein ID:ENSMUSP00000112124
Original member Current member NCBI NM_011889.4 NP_036019.2 Accepted alive Link to Nucleotide Sequence:NM_011889.4Link to Protein Sequence:NP_036019.2Re-query CCDS DB by Nucleotide ID:NM_011889Re-query CCDS DB by Protein ID:NP_036019Link to BLAST:NP_036019.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036019.2 337 Q9Z1S5-2 337 100% 0 0

Chromosomal Locations for CCDS 37157.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 82279444 82279606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82283059 82283187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82283677 82283758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82284372 82284509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82285787 82285904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82286437 82286532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82289195 82289294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82290404 82290455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82290738 82290873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGTCTGAGCTGGTACCTGAGCCCAGGCCTAAGCCGGCGGTGCCCATGAAGCCGGTCAGCATCAACTCCA
ACCTGCTAGGCTACATTGGCATTGACACCATTATCGAGCAGATGCGCAAGAAGACCATGAAGACTGGCTT
TGACTTCAACATCATGGTCGTTGGCCAGAGTGGACTGGGCAAGTCAACACTGGTCAACACCCTCTTCAAG
TCCCAAGTGAGCCGAAAGGCCTCCAGCTGGAACCGGGAGGAGAAGATCCCCAAGACAGTGGAGATCAAAG
CGATTGGGCATGTGATAGAGGAAGGTGGTGTCAAAATGAAGCTGACAGTCATCGACACACCAGGCTTTGG
AGACCAGATCAACAATGAAAACTGCTGGGAGCCCATTGAGAAATACATCAACGAACAGTACGAAAAGTTC
CTGAAGGAGGAGGTGAACATTGCCAGGAAGAAACGCATCCCTGACACCCGTGTCCACTGCTGCCTCTACT
TCATCTCCCCGACAGGACACTCCTTACGACCACTGGATCTTGAGTTCATGAAACATCTCAGCAAAGTGGT
GAACATCATTCCTGTCATTGCCAAGGCTGATACCATGACCCTGGAGGAGAAGTCGGAATTCAAGCAGAGG
GTTCGCAAAGAACTTGAAGTAAACGGCATTGAATTCTACCCTCAGAAGGAATTTGATGAGGATTTGGAGG
ACAAGACAGAGAATGACAAAATCCGGCAGGAGAGCATGCCCTTCGCCGTGGTGGGGAGTGACAAGGAGTA
CCAAGTGAACGGCAAGAGGGTCCTCGGGAGGAAAACACCCTGGGGGATCATCGAAGTGGAAAACCTCAAC
CACTGTGAGTTTGCCCTGCTCCGAGACTTCGTCATCAGGACTCACCTCCAGGACCTCAAAGAAGTAACAC
ACAACATCCACTATGAGACTTACAGGGCCAAGAGGCTCAATGACAATGGAGGCCTCCCTCCGGTGAGCGT
GGACACAGAGGAAAGCCACGACAGTAACCCGTGA

Translation (337 aa):
MSELVPEPRPKPAVPMKPVSINSNLLGYIGIDTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLVNTLFK
SQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKF
LKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIAKADTMTLEEKSEFKQR
VRKELEVNGIEFYPQKEFDEDLEDKTENDKIRQESMPFAVVGSDKEYQVNGKRVLGRKTPWGIIEVENLN
HCEFALLRDFVIRTHLQDLKEVTHNIHYETYRAKRLNDNGGLPPVSVDTEESHDSNP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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