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Report for CCDS36638.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36638.1 Public Mus musculus 13 Pak1ip1 23 108 98 CCDS HistoryNCBI Gene:68083Re-query CCDS DB by CCDS ID:36638.1Re-query CCDS DB by GeneID:68083See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36638.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046951.9 ENSMUSP00000040846.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046951.9Link to Ensembl Protein Viewer:ENSMUSP00000040846.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000046951Re-query CCDS DB by Protein ID:ENSMUSP00000040846
Original member Current member NCBI NM_026550.3 NP_080826.2 Accepted alive Link to Nucleotide Sequence:NM_026550.3Link to Protein Sequence:NP_080826.2Re-query CCDS DB by Nucleotide ID:NM_026550Re-query CCDS DB by Protein ID:NP_080826Link to BLAST:NP_080826.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080826.2 382 Q9DCE5 382 100% 0 0

Chromosomal Locations for CCDS 36638.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 41001330 41001413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41004737 41004899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41008016 41008136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41008211 41008285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41008886 41008938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41009219 41009364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41009448 41009545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41011183 41011282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41012334 41012457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 41012565 41012749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1149 nt):
ATGGAGCTGGTCGCCGGCAGCTACGAGCAGGTCCTGTTTGGGTTCACGGTACAGCGCGGGCCCGCGAAGA
GTGGCCATCAGGAGACATGGACTCCTGTGGCTGATTTCACTCACCACTCGCACACTGCCTCCCTGTCGGT
GCTGGCCTCCAACAGTCGCTATGTAGTCTCTGGCAGCAAAGATGAGACGATTCACATTTATGACATGAAA
AGGAAGGTGGAGCATGGGGCTCTGGTGCATCACGCTGGCACAGTAACTTGCCTGAAATTCCATGGCAACC
AGCACTTAATCAGTGGGGCAGAAGACGGCCACATCTGCATCTGGGATGTGAAGAGATGGAAGTGCCTGAA
GACCTTTAAAGCTCACAGGGGACATGTCACTTTCCTTTCTATCCACCCGTCTGGCAAGTTGGCTCTGTCT
GTTGGCACCGATAAAACATTAAGAACATGGAATCTTATAGAGGGAAGATCAGCTTTCATAAAAAATATAA
AGGAAAATGCTCACATAGTGGAGTGGTCCCCAAGTGGAGGGAAGTACATAGTTGTTGTGCAGAATAAAGT
GGATGTCTATCGGCTGGGCACGGCGTCTGTGAGCGGCACCATCACAAACGGAAAGAGGATCTCTTCTGTT
ACCTTTCTCTCAGACTCTGTCCTTGCAGTGGCTGGAGATGAAGAAGTTGTGAGGATTTTTGACTGTGATT
CCCTAGAGTGCCTCTGTGAATTCAGAGCTCATGAGAACAGGGTAAAAGACATGGTCAGTTTTGAAGTCCC
AGACCATCACGTTCTTGTCACAGCATCAAATGATGGCTTCATCAAAATGTGGACGCTTCCACAGGATAAG
AAAGTTCCTCCATCTTTGCTGTGTGAGGCCAAAACTGGTGCCAGGCTGACATGTCTTACTGTGTGGTTAG
ACAGAGCAGCAAATGGAATGGCGAGCCTTCCTCCAGCAGCAGAGCCCTGCCCTGACCAACCTAAGACAAT
CGAAAAGGAATCTGGTGACACAGTTCAGGAAGAAACATCAGAACCTAACTCGGAGAAATCTGATGTAAGT
GGTGACAGCAAGCAGCCAACAAAAGGAAATAGCCCAGTGACAGCCAAGAAGAGGAAAATGGCAACCATGT
CGGAAAAGAAGAGAAAGAAGAAAATGTAA

Translation (382 aa):
MELVAGSYEQVLFGFTVQRGPAKSGHQETWTPVADFTHHSHTASLSVLASNSRYVVSGSKDETIHIYDMK
RKVEHGALVHHAGTVTCLKFHGNQHLISGAEDGHICIWDVKRWKCLKTFKAHRGHVTFLSIHPSGKLALS
VGTDKTLRTWNLIEGRSAFIKNIKENAHIVEWSPSGGKYIVVVQNKVDVYRLGTASVSGTITNGKRISSV
TFLSDSVLAVAGDEEVVRIFDCDSLECLCEFRAHENRVKDMVSFEVPDHHVLVTASNDGFIKMWTLPQDK
KVPPSLLCEAKTGARLTCLTVWLDRAANGMASLPPAAEPCPDQPKTIEKESGDTVQEETSEPNSEKSDVS
GDSKQPTKGNSPVTAKKRKMATMSEKKRKKKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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