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Report for CCDS34175.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34175.1 Public Homo sapiens 5 MARVELD2 24 110 108 CCDS HistoryNCBI Gene:153562Re-query CCDS DB by CCDS ID:34175.1Re-query CCDS DB by GeneID:153562See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34175.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000325631.10 ENSP00000323264.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000325631.10Link to Ensembl Protein Viewer:ENSP00000323264.5Re-query CCDS DB by Nucleotide ID:ENST00000325631Re-query CCDS DB by Protein ID:ENSP00000323264
Original member Current member EBI ENST00000645446.1 ENSP00000494616.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000645446.1Link to Ensembl Protein Viewer:ENSP00000494616.1Re-query CCDS DB by Nucleotide ID:ENST00000645446Re-query CCDS DB by Protein ID:ENSP00000494616
Original member Current member NCBI NM_001038603.3 NP_001033692.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001038603.3Link to Protein Sequence:NP_001033692.2Re-query CCDS DB by Nucleotide ID:NM_001038603Re-query CCDS DB by Protein ID:NP_001033692Link to BLAST:NP_001033692.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001033692.2 558 Q8N4S9-1 558 100% 0 0

Chromosomal Locations for CCDS 34175.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 69419386 69420531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69424601 69424636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69432527 69432675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69432922 69433093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69440450 69440500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69441532 69441654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1677 nt):
ATGTCAAATGATGGAAGATCCAGGAATCGGGACAGGCGCTACGATGAGGTCCCAAGCGACCTGCCCTATC
AAGATACCACCATAAGAACCCACCCAACTCTTCATGACAGTGAGCGGGCAGTGAGCGCTGATCCCTTGCC
ACCACCCCCTCTCCCATTACAGCCACCATTCGGCCCAGACTTCTACTCAAGTGACACAGAAGAACCAGCT
ATAGCGCCAGATCTCAAACCAGTAAGGCGCTTTGTCCCTGACTCCTGGAAGAACTTTTTCAGAGGGAAGA
AAAAGGACCCCGAATGGGATAAGCCGGTGTCTGATATCAGGTACATCTCCGATGGAGTGGAGTGTTCACC
ACCAGCCTCTCCAGCAAGACCAAACCACCGTTCGCCCCTCAACTCCTGCAAAGATCCCTACGGAGGGTCA
GAAGGAACCTTTAGTTCCCGGAAAGAGGCTGACGCAGTGTTTCCCCGGGATCCCTATGGATCTCTAGACC
GACACACACAAACAGTTCGAACATACAGTGAGAAGGTGGAGGAGTATAACCTGAGATACTCCTACATGAA
GTCGTGGGCAGGCCTGCTGAGAATACTGGGTGTGGTGGAGCTGCTTTTGGGGGCCGGTGTCTTTGCTTGT
GTCACAGCTTACATTCACAAGGACAGTGAGTGGTACAACTTGTTTGGATATTCACAACCGTATGGCATGG
GAGGCGTTGGTGGATTGGGCAGTATGTATGGGGGCTATTACTACACTGGCCCTAAGACCCCTTTTGTACT
CGTGGTTGCTGGATTAGCTTGGATCACCACCATTATTATTCTGGTTCTTGGCATGTCCATGTATTACCGG
ACCATTCTTCTGGACTCTAATTGGTGGCCCCTAACTGAATTTGGAATTAACGTTGCCTTGTTTATTTTGT
ATATGGCCGCAGCCATAGTCTATGTGAATGATACCAACCGAGGTGGCCTCTGCTACTATCCGTTATTTAA
TACACCAGTGAATGCAGTGTTCTGCCGGGTAGAAGGAGGACAGATAGCTGCAATGATCTTCCTGTTTGTC
ACCATGATAGTTTATCTCATTAGTGCTTTGGTTTGCCTAAAGTTATGGAGGCATGAGGCAGCTCGGAGAC
ATAGAGAATATATGGAACAACAGGAGATAAATGAGCCATCATTGTCATCGAAAAGGAAAATGTGTGAAAT
GGCCACCAGTGGTGACAGACAAAGAGACTCAGAAGTTAATTTCAAGGAACTGAGAACAGCAAAAATGAAA
CCTGAACTACTGAGTGGACACATCCCCCCAGGCCACATTCCTAAACCTATCGTGATGCCCGACTATGTGG
CAAAATACCCTGTGATTCAGACAGATGATGAGCGAGAACGCTATAAAGCTGTGTTCCAAGACCAGTTTTC
AGAGTACAAAGAGCTGTCTGCAGAAGTTCAGGCTGTCCTGAGGAAGTTTGATGAGCTGGATGCAGTGATG
AGCAGATTGCCACATCATTCGGAAAGCCGACAGGAACATGAGAGAATTTCAAGAATCCATGAAGAGTTTA
AGAAAAAAAAGAATGATCCTACATTTCTGGAAAAAAAAGAACGCTGTGATTACCTAAAGAATAAACTTTC
TCACATAAAGCAAAGAATTCAAGAATATGATAAAGTAATGAATTGGGATGTACAAGGTTATTCTTAA

Translation (558 aa):
MSNDGRSRNRDRRYDEVPSDLPYQDTTIRTHPTLHDSERAVSADPLPPPPLPLQPPFGPDFYSSDTEEPA
IAPDLKPVRRFVPDSWKNFFRGKKKDPEWDKPVSDIRYISDGVECSPPASPARPNHRSPLNSCKDPYGGS
EGTFSSRKEADAVFPRDPYGSLDRHTQTVRTYSEKVEEYNLRYSYMKSWAGLLRILGVVELLLGAGVFAC
VTAYIHKDSEWYNLFGYSQPYGMGGVGGLGSMYGGYYYTGPKTPFVLVVAGLAWITTIIILVLGMSMYYR
TILLDSNWWPLTEFGINVALFILYMAAAIVYVNDTNRGGLCYYPLFNTPVNAVFCRVEGGQIAAMIFLFV
TMIVYLISALVCLKLWRHEAARRHREYMEQQEINEPSLSSKRKMCEMATSGDRQRDSEVNFKELRTAKMK
PELLSGHIPPGHIPKPIVMPDYVAKYPVIQTDDERERYKAVFQDQFSEYKELSAEVQAVLRKFDELDAVM
SRLPHHSESRQEHERISRIHEEFKKKKNDPTFLEKKERCDYLKNKLSHIKQRIQEYDKVMNWDVQGYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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