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Report for CCDS17851.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17851.2 Public Mus musculus 3 Cxxc4 23 108 98 CCDS HistoryNCBI Gene:319478Re-query CCDS DB by CCDS ID:17851.2See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 17851.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 17851.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000181904.2 ENSMUSP00000138000.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000181904.2Link to Ensembl Protein Viewer:ENSMUSP00000138000.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000181904Re-query CCDS DB by Protein ID:ENSMUSP00000138000
Original member Current member NCBI NM_001004367.4 NP_001004367.2 Accepted alive Link to Nucleotide Sequence:NM_001004367.4Link to Protein Sequence:NP_001004367.2Re-query CCDS DB by Nucleotide ID:NM_001004367Re-query CCDS DB by Protein ID:NP_001004367Link to BLAST:NP_001004367.2

Chromosomal Locations for CCDS 17851.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 134239660 134240715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 134258053 134258097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGAACACCAATGTCTGCGTGGAGCCCGGGCCGAGCCCGGAGGCCCCGGGCTTGCCCAAGGAAAGCCACC
TGCCCGAGGGGGCCCTGAACAGCCTTGTGGATTACAACTCGGAGATGGAGCGTTACCGCTCCTTTGCCAC
CTCCTTCTACAAGACCAACGGGGGCGCCTTCCCGCAGGCAGCCAAGATCGCGCGCATCACCACCCCCATC
TTCCCCAGCAGCGCCGCCGCCGCCGCGGCCGCCGCGCGCATCGGCATGTCCCCGTGGAACTGCGACAACG
CGGCCACCGCCGCCGCCACCGCGATGCTCTGGGGCAGCGGGGGCGGCGGCGGAGGCGGTGGGGGCGGGGG
TGGGGGCGGCGGGGCCGGCAGGAAATCCTCCTCGGCCGCCGCCTCCTCCTCCGCCTCCTCCTCGGCGATC
CTCCCCGCCGCCGGCGGTGGCGGTGGCGGCGGCGGCGGTGGCAGCGGCGGAGGCGGCGGCGGCGGCGGCG
GCGGCAGGACCAGCATGCACCACCGGAACGACTCCCAGCGGCTGGGGAAGGCTGGCTGTCCGCCAGAGCC
GTCGTTGCAAATGGCAAATACTAATTTCCTCTCCACCTTATCCCCCGAACACTGCAGACCTTTGGCGGGG
GAATGCATGAACAAGCTCAAATGCGGCGCTGCTGAAGCAGAGATAATGAATCTCCCCGAGCGGGTGGGGA
CTTTTTCCGCTATCCCGGCTTTAGGGGGCATCTCATTACCTCCAGGGGTCATCGTCATGACAGCCCTTCA
CTCCCCCGCAGCAGCCTCAGCAGCCGTCACAGACAGTGCGTTTCAAATTGCCAATCTGGCAGACTGCCCG
CAGAATCATTCCTCCTCCTCCTCGTCCTCCTCGGGGGGAGCTGGCGGAGCCAACCCGGCCAAGAAGAAGA
GGAAAAGGTGTGGGGTCTGCGTGCCCTGCAAGAGGCTCATCAACTGTGGCGTCTGCAGCAGTTGCAGGAA
CCGCAAAACGGGACACCAGATCTGCAAATTTAGAAAATGTGAAGAGCTAAAGAAAAAACCTGGCACTTCG
CTAGAGAGAACACCTGTTCCCAGCGCTGAAGCGTTCCGATGGTTCTTTTAA

Translation (366 aa):
MNTNVCVEPGPSPEAPGLPKESHLPEGALNSLVDYNSEMERYRSFATSFYKTNGGAFPQAAKIARITTPI
FPSSAAAAAAAARIGMSPWNCDNAATAAATAMLWGSGGGGGGGGGGGGGGGAGRKSSSAAASSSASSSAI
LPAAGGGGGGGGGGSGGGGGGGGGGRTSMHHRNDSQRLGKAGCPPEPSLQMANTNFLSTLSPEHCRPLAG
ECMNKLKCGAAEAEIMNLPERVGTFSAIPALGGISLPPGVIVMTALHSPAAASAAVTDSAFQIANLADCP
QNHSSSSSSSSGGAGGANPAKKKRKRCGVCVPCKRLINCGVCSSCRNRKTGHQICKFRKCEELKKKPGTS
LERTPVPSAEAFRWFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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