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Report for CCDS36137.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36137.1 Public Mus musculus 11 Timd4 23 108 98 CCDS HistoryNCBI Gene:276891Re-query CCDS DB by CCDS ID:36137.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36137.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068877.6 ENSMUSP00000069456.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068877.6Link to Ensembl Protein Viewer:ENSMUSP00000069456.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000068877Re-query CCDS DB by Protein ID:ENSMUSP00000069456
Original member Current member NCBI NM_178759.4 NP_848874.3 Accepted alive Link to Nucleotide Sequence:NM_178759.4Link to Protein Sequence:NP_848874.3Re-query CCDS DB by Nucleotide ID:NM_178759Re-query CCDS DB by Protein ID:NP_848874Link to BLAST:NP_848874.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848874.3 343 Q6U7R4 343 100% 0 0

Chromosomal Locations for CCDS 36137.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 46810812 46810869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46815431 46815772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46817549 46817782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46819177 46819260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46819991 46820044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46837028 46837074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46839261 46839348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46842156 46842195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46843119 46843203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGTCCAAGGGGCTTCTCCTCCTCTGGCTGGTGACGGAGCTCTGGTGGCTTTATCTGACACCAGCTGCCT
CAGAGGATACAATAATAGGGTTTTTGGGCCAGCCGGTGACTTTGCCTTGTCATTACCTCTCGTGGTCCCA
GAGCCGCAACAGTATGTGCTGGGGCAAAGGTTCATGTCCCAATTCCAAGTGCAATGCAGAGCTTCTCCGT
ACAGATGGAACAAGAATCATCTCCAGGAAGTCAACAAAATATACACTTTTGGGGAAGGTCCAGTTTGGTG
AAGTGTCCTTGACCATCTCAAACACCAATCGAGGTGACAGTGGGGTGTACTGCTGCCGTATAGAGGTGCC
TGGCTGGTTCAATGATGTCAAGAAGAATGTGCGCTTGGAGCTGAGGAGAGCCACAACAACCAAAAAACCA
ACAACAACCACCCGGCCAACCACCACCCCTTATGTGACCACCACCACCCCAGAGCTGCTTCCAACAACAG
TCATGACCACATCTGTTCTCCCAACCACCACACCACCCCAGACACTAGCCACCACTGCCTTCAGTACAGC
AGTGACCACGTGCCCCTCAACAACACCTGGCTCCTTCTCACAAGAAACCACAAAAGGGTCCGCCTTCACT
ACAGAATCAGAAACTCTGCCTGCATCCAATCACTCTCAAAGAAGCATGATGACCATATCTACAGACATAG
CCGTACTCAGGCCCACAGGCTCTAACCCTGGGATTCTCCCATCCACTTCACAGCTGACGACACAGAAAAC
AACATTAACAACAAGTGAGTCTTTGCAGAAGACAACTAAATCACATCAGATCAACAGCAGACAGACCATC
TTGATCATTGCCTGCTGTGTGGGATTTGTGCTAATGGTGTTATTGTTTCTGGCGTTTCTCCTTCGAGGGA
AAGTCACAGGAGCCAACTGTTTGCAGAGACACAAGAGGCCAGACAACACTGAAGATAGTGACAGCGTCCT
CAATGACATGTCACACGGGAGGGATGATGAAGACGGGATCTTCACTCTCTGA

Translation (343 aa):
MSKGLLLLWLVTELWWLYLTPAASEDTIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLR
TDGTRIISRKSTKYTLLGKVQFGEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELRRATTTKKP
TTTTRPTTTPYVTTTTPELLPTTVMTTSVLPTTTPPQTLATTAFSTAVTTCPSTTPGSFSQETTKGSAFT
TESETLPASNHSQRSMMTISTDIAVLRPTGSNPGILPSTSQLTTQKTTLTTSESLQKTTKSHQINSRQTI
LIIACCVGFVLMVLLFLAFLLRGKVTGANCLQRHKRPDNTEDSDSVLNDMSHGRDDEDGIFTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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