NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16822.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16822.1 Public Mus musculus 2 Sec23b 23 108 98 CCDS HistoryNCBI Gene:27054Re-query CCDS DB by CCDS ID:16822.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16822.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028916.14 ENSMUSP00000028916.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028916.14Link to Ensembl Protein Viewer:ENSMUSP00000028916.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000028916Re-query CCDS DB by Protein ID:ENSMUSP00000028916
Original member NCBI NM_001252543.1 NP_001239472.1 Updated not alive Link to Nucleotide Sequence:NM_001252543.1Link to Protein Sequence:NP_001239472.1Re-query CCDS DB by Nucleotide ID:NM_001252543Re-query CCDS DB by Protein ID:NP_001239472
Current member NCBI NM_001252543.2 NP_001239472.1 Accepted alive Link to Nucleotide Sequence:NM_001252543.2Link to Protein Sequence:NP_001239472.1Re-query CCDS DB by Nucleotide ID:NM_001252543Re-query CCDS DB by Protein ID:NP_001239472Link to BLAST:NP_001239472.1
Original member NCBI NM_001252544.1 NP_001239473.1 Updated not alive Link to Nucleotide Sequence:NM_001252544.1Link to Protein Sequence:NP_001239473.1Re-query CCDS DB by Nucleotide ID:NM_001252544Re-query CCDS DB by Protein ID:NP_001239473
Current member NCBI NM_001252544.2 NP_001239473.1 Accepted alive Link to Nucleotide Sequence:NM_001252544.2Link to Protein Sequence:NP_001239473.1Re-query CCDS DB by Nucleotide ID:NM_001252544Re-query CCDS DB by Protein ID:NP_001239473Link to BLAST:NP_001239473.1
Original member NCBI NM_001252545.1 NP_001239474.1 Updated not alive Link to Nucleotide Sequence:NM_001252545.1Link to Protein Sequence:NP_001239474.1Re-query CCDS DB by Nucleotide ID:NM_001252545Re-query CCDS DB by Protein ID:NP_001239474
Current member NCBI NM_001252545.2 NP_001239474.1 Accepted alive Link to Nucleotide Sequence:NM_001252545.2Link to Protein Sequence:NP_001239474.1Re-query CCDS DB by Nucleotide ID:NM_001252545Re-query CCDS DB by Protein ID:NP_001239474Link to BLAST:NP_001239474.1
Original member NCBI NM_001355379.1 NP_001342308.1 Updated not alive Link to Nucleotide Sequence:NM_001355379.1Link to Protein Sequence:NP_001342308.1Re-query CCDS DB by Nucleotide ID:NM_001355379Re-query CCDS DB by Protein ID:NP_001342308
Current member NCBI NM_001355379.2 NP_001342308.1 Accepted alive Link to Nucleotide Sequence:NM_001355379.2Link to Protein Sequence:NP_001342308.1Re-query CCDS DB by Nucleotide ID:NM_001355379Re-query CCDS DB by Protein ID:NP_001342308Link to BLAST:NP_001342308.1
Original member NCBI NM_001355380.1 NP_001342309.1 Updated not alive Link to Nucleotide Sequence:NM_001355380.1Link to Protein Sequence:NP_001342309.1Re-query CCDS DB by Nucleotide ID:NM_001355380Re-query CCDS DB by Protein ID:NP_001342309
Current member NCBI NM_001355380.2 NP_001342309.1 Accepted alive Link to Nucleotide Sequence:NM_001355380.2Link to Protein Sequence:NP_001342309.1Re-query CCDS DB by Nucleotide ID:NM_001355380Re-query CCDS DB by Protein ID:NP_001342309Link to BLAST:NP_001342309.1
Original member NCBI NM_019787.4 NP_062761.2 Updated not alive Link to Nucleotide Sequence:NM_019787.4Link to Protein Sequence:NP_062761.2Re-query CCDS DB by Nucleotide ID:NM_019787Re-query CCDS DB by Protein ID:NP_062761
Current member NCBI NM_019787.5 NP_062761.2 Accepted alive Link to Nucleotide Sequence:NM_019787.5Link to Protein Sequence:NP_062761.2Re-query CCDS DB by Nucleotide ID:NM_019787Re-query CCDS DB by Protein ID:NP_062761Link to BLAST:NP_062761.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239472.1 767 Q9D662 767 100% 0 0
NP_001239473.1 767 Q9D662 767 100% 0 0
NP_001239474.1 767 Q9D662 767 100% 0 0
NP_001342308.1 767 Q9D662 767 100% 0 0
NP_001342309.1 767 Q9D662 767 100% 0 0
NP_062761.2 767 Q9D662 767 100% 0 0

Chromosomal Locations for CCDS 16822.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 144559221 144559441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144562132 144562189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144564566 144564652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144566763 144566999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144567101 144567186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144567883 144568027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144568616 144568774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144569100 144569215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144572479 144572602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144574667 144574747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144578332 144578421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144579297 144579403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144581944 144582097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144583691 144583768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144585598 144585759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144586374 144586460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144586866 144587021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144587502 144587567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144590286 144590375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2304 nt):
ATGGCAACGTATCTGGAATTCATTCAGCAGAATGAAGAACGAGATGGTGTGCGTTTCAGTTGGAACGTGT
GGCCTTCTAGCCGCCTTGAAGCCACAAGAATGGTTGTGCCCTTGGCTTGTCTCCTCACTCCTTTAAAAGA
ACGCCCAGACTTACCTCCTGTACAGTATGAACCTGTGCTTTGCAGTAGGCCTACCTGCAAAGCTATTCTC
AATCCACTTTGTCAAGTGGATTACCGAGCAAAACTCTGGGCCTGCAATTTCTGTTTTCAAAGAAATCAGT
TCCCTCCAGCATATGCAGGCATATCTGAGGTGAATCAACCTGCTGAATTGATGCCCCAGTTCTCCACAAT
TGAGTACATGATCCAGAGAGGTGCTCGGTCTCCTCTGATCTTTCTCTATGTGGTTGACACGTGTTTGGAG
GAAGATGACCTTCAAGCACTCAAAGAGTCCCTGCAGATGTCTCTGAGTCTCCTTCCTCCAGATGCCCTGG
TTGGTCTCATCACTTTTGGGAGGATGGTGCAGGTTCATGAGCTAAGCTGTGAAGGAATCTCCAAGAGCTA
TGTCTTCCGAGGGACCAAGGATTTAACTGCAAAGCAAATACAGGAGATGCTGGGCCTGACCAAGTCAGCC
ATGCCTGTGCAGCAAGCCAGACCTGCTCAACCTCAGGAGCAGCCTTTTGTTTCCAGCAGATTTCTACAGC
CCATTCACAAGATTGACATGAACCTCACAGATCTTCTCGGGGAGCTGCAGAGGGACCCATGGCCAGTAAC
TCAGGGGAAGAGACCACTGCGGTCCACTGGTGTTGCTTTGTCCATTGCTGTTGGCTTGTTGGAGGGGACT
TTCCCAAATACTGGAGCCAGGATCATGCTGTTCACTGGCGGGCCCCCGACCCAAGGACCTGGCATGGTGG
TTGGAGATGAGTTGAAGACTCCTATTCGTTCCTGGCACGACATTGAGAAAGATAACGCACGATTCATGAA
GAAGGCAACCAAGCATTATGAGATGCTTGCTAATCGAACTGCTACAAATGGCCACTGCATTGATATTTAT
GCTTGTGCCCTTGACCAAACTGGACTTCTGGAGATGAAGTGCTGTCCAAATCTTACAGGAGGCCACATGG
TGATGGGAGATTCTTTCAACACTTCTCTTTTCAAGCAGACATTCCAAAGAATTTTTAGTAAAGACTTCAA
CGGAGATTTCAGAATGGCGTTTGGTGCTACGTTGGATGTAAAGACCTCTCGGGAACTGAAGATTGCAGGA
GCCATTGGTCCATGCGTGTCTCTGAATGTGAAAGGGCCATGCGTGTCAGAAAATGAGCTTGGTGTTGGTG
GCACAAGTCAGTGGAAGATCTGTGGCCTGGATCCCTCATCTACTCTTGGCATCTACTTTGAAGTTGTCAA
TCAGCACAATGCTCCAGTTCCCCAGGGAGGCAGAGGTGCCATCCAGTTTGTCACACAGTATCAGCATTCC
AGCACTCAGAAGCGCATCCGAGTGACCACCATTGCCCGCAATTGGGCAGATGCACAGAGTCAGCTGAGGC
ACATAGAAGCAGCATTTGACCAGGAGGCCGCAGCAGTCCTGATGGCACGGCTTGGAGTGTTCCGCGCAGA
GTCAGAGGAGGGGCCTGACGTGCTTCGGTGGCTGGATCGGCAACTCATCAGACTGTGTCAGAAGTTTGGG
CAGTATAACAAAGAAGACCCTACGTCTTTCAGATTGTCAGACTCCTTTTCTCTGTATCCTCAGTTCATGT
TCCATCTGAGAAGATCTCCATTTCTTCAAGTATTTAACAACAGTCCTGATGAGTCCTCCTATTATAGACA
CCATTTTGCCCGGCAGGATCTGACTCAGTCCCTCATTATGATCCAGCCCATTCTCTATTCTTACTCCTTC
CACGGACCACCAGAGCCTGTACTCCTGGACAGCAGTAGCATTCTAGCTGACAGAATTCTGCTGATGGATA
CTTTCTTCCAAATTGTCATTTACCTTGGTGAGACCATAGCCCAGTGGCGGAAGGCTGGATACCAGGACAT
GCCCGAGTATGAAAACTTCAAGCACCTTCTTCAGGCGCCCCTGGATGATGCCCAAGAAATTCTGCAAGCA
CGCTTCCCAATGCCACGTTATATCAACACAGAGCATGGCGGCAGTCAGGCTCGGTTCCTGTTGTCTAAAG
TTAACCCATCTCAGACACACAATAACCTGTATGCCTGGGGGCAGGAAACTGGAGCGCCCATCCTGACAGA
CGATGTCAGCCTACAGGTGTTCATGGATCACCTGAAGAAGCTGGCTGTGTCTAGTGCCTCTTAA

Translation (767 aa):
MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTPLKERPDLPPVQYEPVLCSRPTCKAIL
NPLCQVDYRAKLWACNFCFQRNQFPPAYAGISEVNQPAELMPQFSTIEYMIQRGARSPLIFLYVVDTCLE
EDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSCEGISKSYVFRGTKDLTAKQIQEMLGLTKSA
MPVQQARPAQPQEQPFVSSRFLQPIHKIDMNLTDLLGELQRDPWPVTQGKRPLRSTGVALSIAVGLLEGT
FPNTGARIMLFTGGPPTQGPGMVVGDELKTPIRSWHDIEKDNARFMKKATKHYEMLANRTATNGHCIDIY
ACALDQTGLLEMKCCPNLTGGHMVMGDSFNTSLFKQTFQRIFSKDFNGDFRMAFGATLDVKTSRELKIAG
AIGPCVSLNVKGPCVSENELGVGGTSQWKICGLDPSSTLGIYFEVVNQHNAPVPQGGRGAIQFVTQYQHS
STQKRIRVTTIARNWADAQSQLRHIEAAFDQEAAAVLMARLGVFRAESEEGPDVLRWLDRQLIRLCQKFG
QYNKEDPTSFRLSDSFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFARQDLTQSLIMIQPILYSYSF
HGPPEPVLLDSSSILADRILLMDTFFQIVIYLGETIAQWRKAGYQDMPEYENFKHLLQAPLDDAQEILQA
RFPMPRYINTEHGGSQARFLLSKVNPSQTHNNLYAWGQETGAPILTDDVSLQVFMDHLKKLAVSSAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH