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Report for CCDS23027.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23027.1 Public Mus musculus 9 Or8b55 23 108 98 CCDS HistoryNCBI Gene:258777Re-query CCDS DB by CCDS ID:23027.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23027.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051004.4 ENSMUSP00000057086.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051004.4Link to Ensembl Protein Viewer:ENSMUSP00000057086.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000051004Re-query CCDS DB by Protein ID:ENSMUSP00000057086
Original member Current member EBI ENSMUST00000213164.1 ENSMUSP00000149057.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213164.1Link to Ensembl Protein Viewer:ENSMUSP00000149057.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213164Re-query CCDS DB by Protein ID:ENSMUSP00000149057
Original member Current member NCBI NM_146781.2 NP_666992.1 Accepted alive Link to Nucleotide Sequence:NM_146781.2Link to Protein Sequence:NP_666992.1Re-query CCDS DB by Nucleotide ID:NM_146781Re-query CCDS DB by Protein ID:NP_666992Link to BLAST:NP_666992.1

Chromosomal Locations for CCDS 23027.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 38815505 38816440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGACACTAAAAATATTTCCTTCATTACTGAGTTTATCCTGGTTGGCTTAACAGAATATACAGAGACTC
ATTTCCCCTTTTTCTTCCTCTTCCTAGGCATCTATGCTATCACAGTGGCAGGAAACCTGGGCCTGCTCAC
TCTGATTGGAATGAATTCCCCTCTTCACACTCCTATGTACTACTTCCTCTTTAATTTATCTTTCATTGAT
CTCTGTTACTCTACTGTTATTACTCCAAAACTGTTAGTAAACTTTGTTTCTGAGAGGAACACAATTTCCT
ATGAAGGATGCATGACTCAGCTCTATTTCTACTGCTTCTTTGTCAGTGCAGAATGCTATGTGTTGACAGT
GATGGCATATGATCGCTATGTGGCCATCTGTAAGCCCCTGTTGTACACTGTTACCATGTCCCCTCAGGTA
TGCTCTCTGTTGACTCTCATTGTATATGTGGGAGCATTTATTGGTGCATGGGCCCACACAGGTTGCATGA
TGAGGCTGACCTTCTGTAAGGACAACACTGTCAATCATTACATGTGTGACATCCTTCCTCTGCTAGAGCT
TTCCTGCAGTAGCACTTACATTAATGAGCTTGTAGTATTCATTGTTGTAGGTTTTGATGTAGGTGTGCCC
AGCATCACCATCGTTGTTTCTTACACATTCATTCTTTCTAGCATCCTTCACATCCGATCCACTGAAGGCA
GATCTAAGGCTTTCAGCACCTGTAGCTCACATATTATTGTGGTTTCTGTTTTCTTTGGGTCAGGGGCATT
TATGTACCTCCATCCTTCCTCTGTTTTGTCCATGGATCAAGGGAAAGTGTCCACTGTATTCTACACCATT
GTGGTACCCATGCTCAATCCTTTGATCTACAGCTTCAGGAACAAGGAGGTCAAGATTGCCCTGAGAAAAA
CCTTGAGGATGAAAATATCCTCCTGA

Translation (311 aa):
MDTKNISFITEFILVGLTEYTETHFPFFFLFLGIYAITVAGNLGLLTLIGMNSPLHTPMYYFLFNLSFID
LCYSTVITPKLLVNFVSERNTISYEGCMTQLYFYCFFVSAECYVLTVMAYDRYVAICKPLLYTVTMSPQV
CSLLTLIVYVGAFIGAWAHTGCMMRLTFCKDNTVNHYMCDILPLLELSCSSTYINELVVFIVVGFDVGVP
SITIVVSYTFILSSILHIRSTEGRSKAFSTCSSHIIVVSVFFGSGAFMYLHPSSVLSMDQGKVSTVFYTI
VVPMLNPLIYSFRNKEVKIALRKTLRMKISS


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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