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Report for CCDS30708.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30708.1 Public Homo sapiens 1 FOXD2 24 110 108 CCDS HistoryNCBI Gene:2306Re-query CCDS DB by CCDS ID:30708.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30708.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334793.6 ENSP00000335493.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000334793.6Link to Ensembl Protein Viewer:ENSP00000335493.6Re-query CCDS DB by Nucleotide ID:ENST00000334793Re-query CCDS DB by Protein ID:ENSP00000335493
Original member Current member NCBI NM_004474.4 NP_004465.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004474.4Link to Protein Sequence:NP_004465.3Re-query CCDS DB by Nucleotide ID:NM_004474Re-query CCDS DB by Protein ID:NP_004465Link to BLAST:NP_004465.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004465.3 495 O60548 495 100% 0 0

Chromosomal Locations for CCDS 30708.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 47438136 47439623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1488 nt):
ATGACCCTGGGCAGCTGCTGCTGCGAGATCATGTCCTCCGAGAGCTCCCCGGCCGCGCTGTCCGAGGCCG
ACGCAGACATAGACGTGGTGGGCGGCGGCAGCGGCGGGGGGGAGCTCCCAGCTCGCTCCGGGCCCCGCGC
CCCCCGGGACGTGCTCCCCCACGGCCACGAGCCTCCCGCGGAGGAAGCCGAGGCAGACTTAGCCGAGGAC
GAGGAGGAGTCTGGTGGCTGCTCGGACGGCGAGCCCCGCGCTCTGGCGTCCCGGGGGGCGGCGGCCGCAG
CGGGGAGCCCGGGGCCAGGCGCCGCGGCGGCCCGCGGCGCAGCGGGGCCCGGGCCGGGACCGCCGTCGGG
GGGCGCGGCGACGCGGAGCCCGCTGGTGAAGCCGCCCTACTCGTACATCGCGCTCATCACCATGGCCATC
CTGCAGAGCCCCAAGAAGCGGCTGACGTTGAGCGAGATCTGCGAGTTCATCAGCGGCCGCTTCCCCTACT
ACCGGGAGAAGTTCCCCGCCTGGCAGAACAGCATCCGCCACAACCTCTCTCTCAACGACTGCTTCGTCAA
GATCCCCCGCGAGCCGGGCAACCCGGGCAAGGGCAACTACTGGACGCTGGACCCGGAGTCGGCCGACATG
TTCGACAACGGCAGCTTCCTGCGGCGTCGCAAGCGCTTCAAGCGGCAGCCCCTGCCGCCGCCGCACCCAC
ACCCGCACCCTCACCCGGAGCTGCTGCTGCGTGGCGGGGCCGCGGCGGCGGGGGATCCCGGCGCTTTCCT
GCCCGGCTTCGCTGCCTACGGCGCCTACGGCTACGGCTACGGGCTGGCTCTCCCGGCCTACGGCGCACCC
CCGCCGGGGCCGGCCCCGCATCCGCACCCGCACCCGCACGCCTTCGCTTTCGCCGCGGCAGCCGCCGCCG
CTCCTTGCCAGCTGTCGGTACCCCCAGGCCGCGCCGCCGCGCCTCCACCCGGACCTCCGACGGCCTCGGT
GTTCGCAGGCGCGGGATCGGCCCCAGCTCCTGCGCCTGCCTCAGGCTCGGGCCCGGGCCCGGGCCCCGCA
GGCCTGCCCGCCTTCCTGGGCGCGGAGCTGGGCTGCGCCAAAGCCTTCTACGCGGCGTCCCTGAGTCCTC
CCGCAGCCGGCACCGCGGCGGGTCTGCCCACCGCACTTCTGCGCCAGGGCCTCAAGACGGACGCGGGCGG
TGGTGCAGGCGGCGGGGGCGCCGGGGCAGGGCAGAGGCCTTCCTTCTCTATAGACCACATCATGGGCCAC
GGTGGCGGCGGGGCAGCACCCCCGGGCGCCGGCGAGGGCTCTCCGGGACCGCCATTCGCGGCAGCCGCGG
GTCCTGGGGGCCAAGCCCAGGTCTTGGCCATGCTGACTGCTCCGGCCCTGGCTCCCGTTGCTGGCCACAT
TCGCCTCTCGCATCCCGGGGACGCGCTGCTGTCCTCAGGGTCCCGGTTTGCCAGCAAAGTCGCCGGCCTT
AGTGGCTGCCACTTCTGA

Translation (495 aa):
MTLGSCCCEIMSSESSPAALSEADADIDVVGGGSGGGELPARSGPRAPRDVLPHGHEPPAEEAEADLAED
EEESGGCSDGEPRALASRGAAAAAGSPGPGAAAARGAAGPGPGPPSGGAATRSPLVKPPYSYIALITMAI
LQSPKKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPESADM
FDNGSFLRRRKRFKRQPLPPPHPHPHPHPELLLRGGAAAAGDPGAFLPGFAAYGAYGYGYGLALPAYGAP
PPGPAPHPHPHPHAFAFAAAAAAAPCQLSVPPGRAAAPPPGPPTASVFAGAGSAPAPAPASGSGPGPGPA
GLPAFLGAELGCAKAFYAASLSPPAAGTAAGLPTALLRQGLKTDAGGGAGGGGAGAGQRPSFSIDHIMGH
GGGGAAPPGAGEGSPGPPFAAAAGPGGQAQVLAMLTAPALAPVAGHIRLSHPGDALLSSGSRFASKVAGL
SGCHF


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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