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Report for CCDS7558.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7558.1 Public Homo sapiens 10 SORCS3 24 110 108 CCDS HistoryNCBI Gene:22986Re-query CCDS DB by CCDS ID:7558.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7558.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369701.8 ENSP00000358715.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369701.8Link to Ensembl Protein Viewer:ENSP00000358715.3Re-query CCDS DB by Nucleotide ID:ENST00000369701Re-query CCDS DB by Protein ID:ENSP00000358715
Original member Current member NCBI NM_014978.3 NP_055793.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014978.3Link to Protein Sequence:NP_055793.1Re-query CCDS DB by Nucleotide ID:NM_014978Re-query CCDS DB by Protein ID:NP_055793Link to BLAST:NP_055793.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055793.1 1222 Q9UPU3 1222 100% 0 0

Chromosomal Locations for CCDS 7558.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 104641328 104641954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 104842792 104842859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 104915833 104915932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 104977335 104977493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105043055 105043128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105089775 105089839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105105397 105105515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105139397 105139486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105147617 105147796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105157138 105157284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105158892 105158994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105164303 105164379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105167258 105167349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105178066 105178173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105199999 105200116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105201120 105201253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105211137 105211250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105214442 105214613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105216936 105217122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105223116 105223249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105245542 105245665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105247219 105247331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105252775 105252906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105255702 105255801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105256819 105256924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105262331 105262491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105263310 105263374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3669 nt):
ATGGAGGCGGCGCGCACGGAGCGCCCCGCAGGCAGGCCGGGGGCGCCGCTTGTCCGGACGGGGCTCCTAC
TCTTGTCGACGTGGGTCCTGGCCGGCGCCGAGATCACTTGGGACGCGACAGGCGGTCCCGGACGCCCGGC
GGCCCCGGCTTCGCGGCCACCGGCGTTGTCTCCACTCTCGCCGCGGGCAGTGGCCAGCCAGTGGCCGGAG
GAGCTGGCGTCGGCGCGGAGAGCCGCCGTGCTGGGGCGCCGGGCCGGACCAGAGCTGCTGCCCCAGCAGG
GCGGCGGCAGAGGCGGTGAGATGCAGGTGGAAGCCGGAGGGACATCACCGGCAGGCGAGCGGCGGGGCCG
GGGCATCCCAGCTCCTGCCAAGCTTGGCGGCGCGAGGAGGAGTCGCCGGGCGCAGCCCCCAATCACCCAG
GAACGCGGGGACGCCTGGGCCACTGCTCCGGCCGATGGTTCCAGAGGAAGCCGTCCCCTTGCTAAGGGTT
CCCGGGAGGAGGTGAAGGCGCCGCGGGCTGGGGGGTCGGCGGCTGAAGACCTCCGGCTGCCCAGCACCTC
CTTCGCGCTGACCGGGGACTCGGCCCACAACCAAGCCATGGTGCACTGGTCGGGACACAACAGCAGCGTC
ATACTTATCCTGACGAAGCTGTATGACTTCAACCTGGGCAGCGTGACTGAGAGTTCACTATGGAGGTCGA
CAGATTATGGCACCACCTATGAAAAGCTGAATGACAAAGTGGGTTTGAAGACTGTCCTCAGTTACCTCTA
TGTCAATCCAACCAACAAAAGGAAGATTATGCTTCTCAGTGATCCTGAGATGGAGAGCAGCATATTGATC
AGCTCAGACGAAGGGGCGACCTATCAGAAGTATCGGCTCACCTTCTATATCCAGAGCCTGCTCTTTCATC
CCAAGCAAGAGGACTGGGTGCTGGCCTACAGTTTGGATCAAAAGCTCTACAGCTCCATGGACTTTGGAAG
ACGGTGGCAACTCATGCATGAACGCATCACACCCAACAGGTTTTATTGGTCGGTGGCCGGATTGGATAAG
GAGGCGGACCTGGTGCACATGGAGGTGCGGACCACGGATGGATATGCTCACTACCTCACCTGCAGGATCC
AGGAATGTGCCGAGACAACTAGAAGTGGGCCTTTTGCCCGCTCCATTGACATCAGTTCCCTGGTTGTCCA
GGATGAATATATCTTCATTCAGGTAACAACTAGTGGAAGAGCCAGCTACTACGTGTCTTATCGAAGAGAG
GCCTTTGCTCAGATAAAGCTGCCTAAGTACTCGTTGCCAAAGGACATGCACATCATCAGTACAGACGAGA
ACCAAGTATTTGCTGCGGTCCAAGAATGGAACCAGAACGACACGTACAACCTCTACATCTCAGACACGCG
TGGGATTTACTTCACTCTGGCCATGGAGAACATCAAGAGCAGCAGAGGTCTAATGGGGAACATCATTATT
GAATTGTATGAGGTAGCAGGTATCAAAGGGATATTTCTGGCAAACAAGAAGGTGGACGACCAGGTGAAGA
CATACATCACTTACAACAAAGGCAGGGATTGGCGCCTGCTGCAAGCTCCGGATGTGGACCTGAGAGGAAG
CCCAGTGCACTGCCTGCTGCCCTTCTGTTCCTTACATCTGCACCTGCAACTCTCTGAAAATCCATATTCC
TCAGGAAGAATCTCTAGCAAGGAGACAGCCCCAGGACTTGTGGTGGCTACAGGCAACATTGGCCCGGAGC
TCTCATATACTGATATTGGTGTGTTCATCTCCTCCGATGGGGGCAACACATGGAGACAGATCTTTGATGA
AGAGTACAATGTCTGGTTCCTAGACTGGGGTGGTGCCCTCGTGGCCATGAAACACACACCTCTGCCAGTC
AGGCATTTGTGGGTGAGTTTTGATGAGGGCCACTCTTGGGACAAGTATGGTTTCACTTCGGTTCCTCTCT
TTGTTGACGGGGCTCTGGTGGAGGCAGGAATGGAGACCCACATCATGACAGTTTTTGGCCACTTCAGCCT
CCGCTCCGAATGGCAATTGGTGAAAGTGGACTACAAATCTATCTTCAGCCGGCATTGCACCAAGGAGGAC
TATCAGACCTGGCACCTGCTCAATCAGGGAGAGCCTTGTGTCATGGGAGAAAGGAAAATATTCAAGAAAC
GTAAGCCAGGAGCTCAGTGTGCCCTGGGCCGAGACCACTCAGGATCAGTGGTCTCAGAACCCTGTGTCTG
TGCCAATTGGGACTTCGAGTGTGACTATGGGTATGAGAGACATGGGGAGAGCCAGTGTGTCCCAGCTTTC
TGGTACAATCCAGCATCCCCATCAAAGGACTGCAGCCTTGGTCAAAGCTACCTTAACAGCACTGGGTATC
GGCGGATTGTGTCCAACAACTGCACAGATGGGCTAAGGGAGAAGTACACCGCCAAGGCCCAGATGTGCCC
TGGAAAAGCCCCTCGGGGCCTCCATGTGGTGACGACCGATGGGCGGCTGGTGGCAGAGCAGGGGCACAAT
GCAACTTTCATCATCCTCATGGAGGAGGGTGATCTACAAAGGACAAACATCCAGCTTGACTTTGGGGATG
GGATTGCTGTGTCCTACGCAAACTTCAGCCCCATCGAGGACGGCATCAAGCACGTGTATAAGAGTGCGGG
GATCTTCCAGGTGACAGCCTATGCAGAGAACAACCTTGGCTCAGACACAGCTGTCCTCTTCCTGCATGTG
GTTTGTCCTGTGGAGCATGTTCATCTCCGAGTTCCATTTGTTGCCATAAGAAATAAGGAGGTCAACATCA
GTGCAGTCGTGTGGCCCAGTCAACTGGGGACCCTTACCTATTTCTGGTGGTTCGGCAATAGCACAAAGCC
TCTCATCACTTTGGACAGCAGCATTTCCTTCACATTCCTTGCAGAAGGAACCGACACCATCACAGTCCAG
GTGGCTGCTGGGAATGCCCTCATCCAGGACACAAAAGAGATTGCAGTTCATGAATATTTCCAGTCCCAGC
TTTTATCATTCTCTCCTAATCTGGATTACCACAATCCTGACATTCCTGAGTGGAGAAAAGATATTGGCAA
TGTCATCAAGCGAGCTCTGGTTAAAGTAACCAGTGTCCCAGAGGACCAGATCCTCATTGCCGTGTTTCCT
GGTCTCCCCACTTCAGCAGAGCTTTTCATTCTTCCACCCAAGAACCTGACAGAGAGGAGGAAAGGCAATG
AAGGGGACCTGGAACAAATTGTAGAAACACTGTTTAATGCTCTCAACCAAAATTTGGTCCAGTTTGAGCT
GAAGCCGGGGGTACAAGTCATTGTGTATGTCACACAGCTGACGTTAGCTCCATTGGTGGACTCCAGTGCT
GGGCACAGCAGCTCAGCCATGCTTATGCTATTATCAGTGGTATTTGTTGGCCTGGCTGTGTTTTTGATCT
ACAAGTTTAAAAGGAAAATCCCTTGGATTAACATCTATGCTCAAGTCCAACACGACAAGGAGCAGGAGAT
GATTGGGTCAGTGAGCCAAAGTGAAAACGCCCCCAAAATCACACTCAGTGACTTTACGGAGCCTGAGGAG
CTGCTGGACAAAGAGCTGGACACGCGGGTCATAGGAGGCATTGCCACTATTGCAAACAGCGAAAGCACAA
AGGAGATCCCCAACTGCACTAGTGTTTAA

Translation (1222 aa):
MEAARTERPAGRPGAPLVRTGLLLLSTWVLAGAEITWDATGGPGRPAAPASRPPALSPLSPRAVASQWPE
ELASARRAAVLGRRAGPELLPQQGGGRGGEMQVEAGGTSPAGERRGRGIPAPAKLGGARRSRRAQPPITQ
ERGDAWATAPADGSRGSRPLAKGSREEVKAPRAGGSAAEDLRLPSTSFALTGDSAHNQAMVHWSGHNSSV
ILILTKLYDFNLGSVTESSLWRSTDYGTTYEKLNDKVGLKTVLSYLYVNPTNKRKIMLLSDPEMESSILI
SSDEGATYQKYRLTFYIQSLLFHPKQEDWVLAYSLDQKLYSSMDFGRRWQLMHERITPNRFYWSVAGLDK
EADLVHMEVRTTDGYAHYLTCRIQECAETTRSGPFARSIDISSLVVQDEYIFIQVTTSGRASYYVSYRRE
AFAQIKLPKYSLPKDMHIISTDENQVFAAVQEWNQNDTYNLYISDTRGIYFTLAMENIKSSRGLMGNIII
ELYEVAGIKGIFLANKKVDDQVKTYITYNKGRDWRLLQAPDVDLRGSPVHCLLPFCSLHLHLQLSENPYS
SGRISSKETAPGLVVATGNIGPELSYTDIGVFISSDGGNTWRQIFDEEYNVWFLDWGGALVAMKHTPLPV
RHLWVSFDEGHSWDKYGFTSVPLFVDGALVEAGMETHIMTVFGHFSLRSEWQLVKVDYKSIFSRHCTKED
YQTWHLLNQGEPCVMGERKIFKKRKPGAQCALGRDHSGSVVSEPCVCANWDFECDYGYERHGESQCVPAF
WYNPASPSKDCSLGQSYLNSTGYRRIVSNNCTDGLREKYTAKAQMCPGKAPRGLHVVTTDGRLVAEQGHN
ATFIILMEEGDLQRTNIQLDFGDGIAVSYANFSPIEDGIKHVYKSAGIFQVTAYAENNLGSDTAVLFLHV
VCPVEHVHLRVPFVAIRNKEVNISAVVWPSQLGTLTYFWWFGNSTKPLITLDSSISFTFLAEGTDTITVQ
VAAGNALIQDTKEIAVHEYFQSQLLSFSPNLDYHNPDIPEWRKDIGNVIKRALVKVTSVPEDQILIAVFP
GLPTSAELFILPPKNLTERRKGNEGDLEQIVETLFNALNQNLVQFELKPGVQVIVYVTQLTLAPLVDSSA
GHSSSAMLMLLSVVFVGLAVFLIYKFKRKIPWINIYAQVQHDKEQEMIGSVSQSENAPKITLSDFTEPEE
LLDKELDTRVIGGIATIANSESTKEIPNCTSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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