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Report for CCDS7558.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7558.1 Public Homo sapiens 10 SORCS3 24 110 108 CCDS HistoryNCBI Gene:22986Re-query CCDS DB by CCDS ID:7558.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7558.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369701.8 ENSP00000358715.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369701.8Link to Ensembl Protein Viewer:ENSP00000358715.3Re-query CCDS DB by Nucleotide ID:ENST00000369701Re-query CCDS DB by Protein ID:ENSP00000358715
Original member Current member NCBI NM_014978.3 NP_055793.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014978.3Link to Protein Sequence:NP_055793.1Re-query CCDS DB by Nucleotide ID:NM_014978Re-query CCDS DB by Protein ID:NP_055793Link to BLAST:NP_055793.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055793.1 1222 Q9UPU3 1222 100% 0 0

Chromosomal Locations for CCDS 7558.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 104641328 104641954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 104842792 104842859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 104915833 104915932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 104977335 104977493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105043055 105043128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105089775 105089839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105105397 105105515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105139397 105139486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105147617 105147796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105157138 105157284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105158892 105158994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105164303 105164379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105167258 105167349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105178066 105178173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105199999 105200116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105201120 105201253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105211137 105211250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105214442 105214613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105216936 105217122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105223116 105223249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105245542 105245665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105247219 105247331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105252775 105252906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105255702 105255801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105256819 105256924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105262331 105262491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 105263310 105263374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3669 nt):
ATGGAGGCGGCGCGCACGGAGCGCCCCGCAGGCAGGCCGGGGGCGCCGCTTGTCCGGACGGGGCTCCTAC
TC
TTGTCGACGTGGGTCCTGGCCGGCGCCGAGATCACTTGGGACGCGACAGGCGGTCCCGGACGCCCGGC
G
GCCCCGGCTTCGCGGCCACCGGCGTTGTCTCCACTCTCGCCGCGGGCAGTGGCCAGCCAGTGGCCGGAG
GAG
CTGGCGTCGGCGCGGAGAGCCGCCGTGCTGGGGCGCCGGGCCGGACCAGAGCTGCTGCCCCAGCAGG
GC
GGCGGCAGAGGCGGTGAGATGCAGGTGGAAGCCGGAGGGACATCACCGGCAGGCGAGCGGCGGGGCCG
G
GGCATCCCAGCTCCTGCCAAGCTTGGCGGCGCGAGGAGGAGTCGCCGGGCGCAGCCCCCAATCACCCAG
GAA
CGCGGGGACGCCTGGGCCACTGCTCCGGCCGATGGTTCCAGAGGAAGCCGTCCCCTTGCTAAGGGTT
CC
CGGGAGGAGGTGAAGGCGCCGCGGGCTGGGGGGTCGGCGGCTGAAGACCTCCGGCTGCCCAGCACCTC
C
TTCGCGCTGACCGGGGACTCGGCCCACAACCAAGCCATGGTGCACTGGTCGGGACACAACAGCAGCGTC
ATA
CTTATCCTGACGAAGCTGTATGACTTCAACCTGGGCAGCGTGACTGAGAGTTCACTATGGAGGTCGA
CA
GATTATGGCACCACCTATGAAAAGCTGAATGACAAAGTGGGTTTGAAGACTGTCCTCAGTTACCTCTA
T
GTCAATCCAACCAACAAAAGGAAGATTATGCTTCTCAGTGATCCTGAGATGGAGAGCAGCATATTGATC
AGC
TCAGACGAAGGGGCGACCTATCAGAAGTATCGGCTCACCTTCTATATCCAGAGCCTGCTCTTTCATC
CC
AAGCAAGAGGACTGGGTGCTGGCCTACAGTTTGGATCAAAAGCTCTACAGCTCCATGGACTTTGGAAG
A
CGGTGGCAACTCATGCATGAACGCATCACACCCAACAGGTTTTATTGGTCGGTGGCCGGATTGGATAAG
GAG
GCGGACCTGGTGCACATGGAGGTGCGGACCACGGATGGATATGCTCACTACCTCACCTGCAGGATCC
AG
GAATGTGCCGAGACAACTAGAAGTGGGCCTTTTGCCCGCTCCATTGACATCAGTTCCCTGGTTGTCCA
G
GATGAATATATCTTCATTCAGGTAACAACTAGTGGAAGAGCCAGCTACTACGTGTCTTATCGAAGAGAG
GCC
TTTGCTCAGATAAAGCTGCCTAAGTACTCGTTGCCAAAGGACATGCACATCATCAGTACAGACGAGA
AC
CAAGTATTTGCTGCGGTCCAAGAATGGAACCAGAACGACACGTACAACCTCTACATCTCAGACACGCG
T
GGGATTTACTTCACTCTGGCCATGGAGAACATCAAGAGCAGCAGAGGTCTAATGGGGAACATCATTATT
GAA
TTGTATGAGGTAGCAGGTATCAAAGGGATATTTCTGGCAAACAAGAAGGTGGACGACCAGGTGAAGA
CA
TACATCACTTACAACAAAGGCAGGGATTGGCGCCTGCTGCAAGCTCCGGATGTGGACCTGAGAGGAAG
C
CCAGTGCACTGCCTGCTGCCCTTCTGTTCCTTACATCTGCACCTGCAACTCTCTGAAAATCCATATTCC
TCA
GGAAGAATCTCTAGCAAGGAGACAGCCCCAGGACTTGTGGTGGCTACAGGCAACATTGGCCCGGAGC
TC
TCATATACTGATATTGGTGTGTTCATCTCCTCCGATGGGGGCAACACATGGAGACAGATCTTTGATGA
A
GAGTACAATGTCTGGTTCCTAGACTGGGGTGGTGCCCTCGTGGCCATGAAACACACACCTCTGCCAGTC
AGG
CATTTGTGGGTGAGTTTTGATGAGGGCCACTCTTGGGACAAGTATGGTTTCACTTCGGTTCCTCTCT
TT
GTTGACGGGGCTCTGGTGGAGGCAGGAATGGAGACCCACATCATGACAGTTTTTGGCCACTTCAGCCT
C
CGCTCCGAATGGCAATTGGTGAAAGTGGACTACAAATCTATCTTCAGCCGGCATTGCACCAAGGAGGAC
TAT
CAGACCTGGCACCTGCTCAATCAGGGAGAGCCTTGTGTCATGGGAGAAAGGAAAATATTCAAGAAAC
GT
AAGCCAGGAGCTCAGTGTGCCCTGGGCCGAGACCACTCAGGATCAGTGGTCTCAGAACCCTGTGTCTG
T
GCCAATTGGGACTTCGAGTGTGACTATGGGTATGAGAGACATGGGGAGAGCCAGTGTGTCCCAGCTTTC
TGG
TACAATCCAGCATCCCCATCAAAGGACTGCAGCCTTGGTCAAAGCTACCTTAACAGCACTGGGTATC
GG
CGGATTGTGTCCAACAACTGCACAGATGGGCTAAGGGAGAAGTACACCGCCAAGGCCCAGATGTGCCC
T
GGAAAAGCCCCTCGGGGCCTCCATGTGGTGACGACCGATGGGCGGCTGGTGGCAGAGCAGGGGCACAAT
GCA
ACTTTCATCATCCTCATGGAGGAGGGTGATCTACAAAGGACAAACATCCAGCTTGACTTTGGGGATG
GG
ATTGCTGTGTCCTACGCAAACTTCAGCCCCATCGAGGACGGCATCAAGCACGTGTATAAGAGTGCGGG
G
ATCTTCCAGGTGACAGCCTATGCAGAGAACAACCTTGGCTCAGACACAGCTGTCCTCTTCCTGCATGTG
GTT
TGTCCTGTGGAGCATGTTCATCTCCGAGTTCCATTTGTTGCCATAAGAAATAAGGAGGTCAACATCA
GT
GCAGTCGTGTGGCCCAGTCAACTGGGGACCCTTACCTATTTCTGGTGGTTCGGCAATAGCACAAAGCC
T
CTCATCACTTTGGACAGCAGCATTTCCTTCACATTCCTTGCAGAAGGAACCGACACCATCACAGTCCAG
GTG
GCTGCTGGGAATGCCCTCATCCAGGACACAAAAGAGATTGCAGTTCATGAATATTTCCAGTCCCAGC
TT
TTATCATTCTCTCCTAATCTGGATTACCACAATCCTGACATTCCTGAGTGGAGAAAAGATATTGGCAA
T
GTCATCAAGCGAGCTCTGGTTAAAGTAACCAGTGTCCCAGAGGACCAGATCCTCATTGCCGTGTTTCCT
GGT
CTCCCCACTTCAGCAGAGCTTTTCATTCTTCCACCCAAGAACCTGACAGAGAGGAGGAAAGGCAATG
AA
GGGGACCTGGAACAAATTGTAGAAACACTGTTTAATGCTCTCAACCAAAATTTGGTCCAGTTTGAGCT
G
AAGCCGGGGGTACAAGTCATTGTGTATGTCACACAGCTGACGTTAGCTCCATTGGTGGACTCCAGTGCT
GGG
CACAGCAGCTCAGCCATGCTTATGCTATTATCAGTGGTATTTGTTGGCCTGGCTGTGTTTTTGATCT
AC
AAGTTTAAAAGGAAAATCCCTTGGATTAACATCTATGCTCAAGTCCAACACGACAAGGAGCAGGAGAT
G
ATTGGGTCAGTGAGCCAAAGTGAAAACGCCCCCAAAATCACACTCAGTGACTTTACGGAGCCTGAGGAG
CTG
CTGGACAAAGAGCTGGACACGCGGGTCATAGGAGGCATTGCCACTATTGCAAACAGCGAAAGCACAA
AG
GAGATCCCCAACTGCACTAGTGTTTAA


Translation (1222 aa):
MEAARTERPAGRPGAPLVRTGLLLLSTWVLAGAEITWDATGGPGRPAAPASRPPALSPLSPRAVASQWPE
E
LASARRAAVLGRRAGPELLPQQGGGRGGEMQVEAGGTSPAGERRGRGIPAPAKLGGARRSRRAQPPITQ
E
RGDAWATAPADGSRGSRPLAKGSREEVKAPRAGGSAAEDLRLPSTSFALTGDSAHNQAMVHWSGHNSS
V
I
LILTKLYDFNLGSVTESSLW
RSTDYGTTYEKLNDKVGLKTVLSYLYVNPTNKRKIMLLSDPEMESSILI
S
SDEGATYQKYRLTFYIQSLLFHPKQEDWVLAYSLDQK
LYSSMDFGRRWQLMHERITPNRFYWSVAGLDK
E
ADLVHMEVRTTDG
YAHYLTCRIQECAETTRSGPFARSIDISSLVVQDEYIFIQVTTSGRASYYVSYRRE
A
FAQIKLPKYSLPK
DMHIISTDENQVFAAVQEWNQNDTYNLYISDTRGIYFTLAMENIKSSRGLMGNIII
E
LYE
VAGIKGIFLANKKVDDQVKTYITYNKGRDWRLLQAPDVDLRGSPVHCLLPFCSLHLHLQLSENPYS
S
GRISSKETAPGLVVAT
GNIGPELSYTDIGVFISSDGGNTWRQIFDEEYNVWFLDWGGALVAMKHTPLPV
R
HL
WVSFDEGHSWDKYGFTSVPLFVDGALVEAGMETHIMTVFGHFSLRSEWQLVKVDYKSIFSRHCTKED
Y
QTWHLLNQ
GEPCVMGERKIFKKRKPGAQCALGRDHSGSVVSEPCVCANWDFECDYGYERHGESQCVPAF
W
YNPASPSKDCSLGQSYLNST
GYRRIVSNNCTDGLREKYTAKAQMCPGKAPRGLHVVTTDGRLVAEQGHN
A
TFIILMEE
GDLQRTNIQLDFGDGIAVSYANFSPIEDGIKHVYKSAGIFQVTAYAENNLGSDTAVLFLHV
V
CPVEHVHLRVPFVAIRNKEVNISAVVWPSQLGTLTYFWWFGNSTKPLITLDSSISFTFLAEGTDTITVQ
V
AAGNALIQDTKEIAVH
EYFQSQLLSFSPNLDYHNPDIPEWRKDIGNVIKRALVKVTSVPEDQILIAVFP
G
LPTSAELFILPPKNLTERRKGNEGDLEQ
IVETLFNALNQNLVQFELKPGVQVIVYVTQLTLAPLVDSSA
G
HSSSAMLMLLSVVFVGLAVFLIYKFK
RKIPWINIYAQVQHDKEQEMIGSVSQSENAPKITLSDFTEPEE
L
LDKELDTRVI
GGIATIANSESTKEIPNCTSV



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser