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Report for CCDS16946.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16946.1 Public Mus musculus 2 Pigu 23 108 98 CCDS HistoryNCBI Gene:228812Re-query CCDS DB by CCDS ID:16946.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16946.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077626.12 ENSMUSP00000076816.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077626.12Link to Ensembl Protein Viewer:ENSMUSP00000076816.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000077626Re-query CCDS DB by Protein ID:ENSMUSP00000076816
Original member Current member NCBI NM_001004721.1 NP_001004721.1 Accepted alive Link to Nucleotide Sequence:NM_001004721.1Link to Protein Sequence:NP_001004721.1Re-query CCDS DB by Nucleotide ID:NM_001004721Re-query CCDS DB by Protein ID:NP_001004721Link to BLAST:NP_001004721.1

Chromosomal Locations for CCDS 16946.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 155278536 155278649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155292690 155292832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155297083 155297207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155299046 155299189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155301201 155301355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155314502 155314599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155328581 155328681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155331149 155331258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155335361 155335423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155336682 155336741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155345648 155345712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155357266 155357395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1308 nt):
ATGGCGGCTCCCTTGGCCCTGGTGCTTGTGGTGGCCGTGACCGTGAGGGCGGCCTTGTTTCGCTCCAGTT
TGGCCGAGTTCATTTCCGAGAGGGTGGAGGTGGTGTCCCCACTGAGCTCTTGGAAGAGAGTGGTTGAAGG
CCTTGCACTGTTGGATCTGGGAGTGTCTCCATATTCTGGAGCAGTATTTCACGAAACTCCATTAATAATA
TACCTCTTTCATTTCCTAATTGACTATGCAGAATTGGTATTTATGATAACAGATGCCCTCACTGCTATTG
CCCTGTATTTTGCAATTCAGGACTTCAATAAAGTTGTGTTTAAAAAGCAGAAGCTTCTCCTAGAGCTGGA
CCAGTATGCTCCAGATGTGGCTGAACTCATCCGAACCCCCATGGAAATGCGCTACATCCCTCTGAAAGTG
GCCCTGTTCTATCTCCTAAATCCCTACACGATCTTGTCTTGTGTTGCCAAGTCTACCTGCGCCATCAACA
ACACCCTCATTGCTTTCTTCATTTTGACCACAATAAAAGGCAGCGTTTTCCTCAGTGCTGTTTTTCTTGC
CTTAGCAACATACCAGTCTCTGTACCCAGTCACCCTGTTTGCCCCAGGACTTCTCTATCTCCTCCAGCGG
CAGTACATCCCTGTTAAAGTGAAGAGCAAAGCCTTCTGGATCTTCTCGTGGGAGTACGCCATGATGTACA
CAGGAAGCCTGGTGGTGATAGTTTGCCTCTCTTTCTTCCTTCTCAGCTCCTGGGACTTCATCCCTGCAGT
CTATGGTTTCATACTCTCTGTTCCAGATCTCACTCCAAACATTGGTCTTTTCTGGTACTTCTTTGCAGAG
ATGTTTGAGCACTTCAGCCTCTTTTTTGTCTGCGTGTTTCAGATCAACGTCTTCTTCTACACAGTTCCAT
TAGCCATCAAATTAAAGGAGCATCCCATCTTCTTCATGTTCATTCAGATTGCCATCATCTCTATCTTCAA
GTCCTATCCAACTGTGGGGGATGTGGCCCTCTACATGGCTTTCTTCCCTGTGTGGAACCATCTCTACAGA
TTCCTGCGGAACATCTTCGTCCTCACCTGCATCATCATCGTCTGCTCTCTTCTCTTCCCTGTCCTGTGGC
ACCTATGGATTTATGCAGGAAGTGCCAACTCTAATTTCTTTTATGCCATCACACTGACCTTCAATGTTGG
GCAGATCCTGCTCATCTCTGACTACTTCTATGCCTTCCTGCGGCGGGAGTATTACCTCACACACGGCCTC
TACTTGACTGCCAAGGACGGCACTGAGGCCATGCTTGTGCTCAAGTAG

Translation (435 aa):
MAAPLALVLVVAVTVRAALFRSSLAEFISERVEVVSPLSSWKRVVEGLALLDLGVSPYSGAVFHETPLII
YLFHFLIDYAELVFMITDALTAIALYFAIQDFNKVVFKKQKLLLELDQYAPDVAELIRTPMEMRYIPLKV
ALFYLLNPYTILSCVAKSTCAINNTLIAFFILTTIKGSVFLSAVFLALATYQSLYPVTLFAPGLLYLLQR
QYIPVKVKSKAFWIFSWEYAMMYTGSLVVIVCLSFFLLSSWDFIPAVYGFILSVPDLTPNIGLFWYFFAE
MFEHFSLFFVCVFQINVFFYTVPLAIKLKEHPIFFMFIQIAIISIFKSYPTVGDVALYMAFFPVWNHLYR
FLRNIFVLTCIIIVCSLLFPVLWHLWIYAGSANSNFFYAITLTFNVGQILLISDYFYAFLRREYYLTHGL
YLTAKDGTEAMLVLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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