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Report for CCDS37566.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37566.1 Public Mus musculus 17 Adamts10 23 108 98 CCDS HistoryNCBI Gene:224697Re-query CCDS DB by CCDS ID:37566.1See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 37566.1
This CCDS representation lacks publicly available full-length transcript support in mouse. However, it is supported by the full-length human transcript AF163762.1, by partial mouse EST alignments including BB840099.1, and by the full-length sequence described for this mouse protein in PMID:15355968. Other mouse full-length transcript variants are available for this gene, including BC082773.1, AK042525.1 and BC056427.1, but it should be noted that all of these include an alternative splice acceptor site in exon 6, which results in a premature termination codon that likely leads to nonsense-mediated mRNA decay (NMD). The exon combination represented in this CCDS is therefore more likely to be protein-coding.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 37566.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087623.12 ENSMUSP00000084905.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087623.12Link to Ensembl Protein Viewer:ENSMUSP00000084905.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000087623Re-query CCDS DB by Protein ID:ENSMUSP00000084905
Original member Current member NCBI NM_172619.4 NP_766207.2 Accepted alive Link to Nucleotide Sequence:NM_172619.4Link to Protein Sequence:NP_766207.2Re-query CCDS DB by Nucleotide ID:NM_172619Re-query CCDS DB by Protein ID:NP_766207Link to BLAST:NP_766207.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766207.2 1104 P58459-1 1104 100% 0 0

Chromosomal Locations for CCDS 37566.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 33528383 33528470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33528680 33529026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33530133 33530289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33531580 33531797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33537092 33537175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33537279 33537424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33537900 33537943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33538068 33538173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33538264 33538410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33538571 33538712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33543198 33543305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33543636 33543781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33543872 33543935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33544955 33545057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33545304 33545437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33545542 33545665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33548823 33548903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33548997 33549160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33549259 33549385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33549480 33549609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33550466 33550670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33551014 33551190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33551268 33551430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 33553085 33553194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3315 nt):
ATGGCTTCTGCCTGCCAGATCCTCCGCTGGGCCCTTGCCCTGGGGCTGGGCCTCACATTCAAGGTCACGC
ATGCCTTCAGATCTCAAGATGAGCTCCTGTCCAGTTTGGAGAGCTATGAGATTGCCTTCCCAACTCGAGT
GGACCACAACGGGGCAATGCTGGCCTTCTCTCCACCTGCCTTCCGGAGGCAGCGTCGGGGTGCAGGGGCT
ACAACTGAGTCCCGCCTATTCTACAAGGTGGCCGCACCCAGCACTCACTTCCTGCTGAACCTGACCCGCA
GCCCCCGTCTCCTGGCAGGGCACGTCTCGGTGGAATACTGGACACGGGAAGGCCTGGCTTGGCAGAGGGC
TGCCCGGGCCCACTGCCTATACGCTGGCCACCTGCAGGGCCAGGCTGGTAGCTCCCATGTGGCCGTCAGC
ACCTGTGGGGGCCTGCATGGCCTGATTGTGGCAGATGATGAAGAGTATCTGATTGAACCCCTGCAAGGTG
GACCCAAAGGTCACCGTGGCCCAGAAGAGAGTGGCCCCCATGTAGTATACAAGCGTTCCTCTCTGCGTCA
CCCCCATCTGGACACAGCCTGTGGAGTGAGAGATGAGAAACCGTGGAAGGGTCGTCCATGGTGGTTACGT
ACCCTGAAGCCACCACCTGCCAGGCCCCTGGGGAATGAATCTGAGCGAGGCCAGCTGGGCCTGAAGAGAT
CAGTCAGCAGAGAGCGCTATGTGGAGACCCTGGTGGTAGCCGACAAGATGATGGTGGCCTACCATGGGCG
GAGAGATGTGGAGCAGTATGTGTTGGCCATCATGAACATTGTTGCCAAACTTTTCCAGGACTCGAGTCTG
GGAAACATCGTCAACATCCTGGTCACTCGCCTCATCCTGCTCACAGAGGACCAGCCCACCCTGGAGATCA
CCCACCATGCCGGGAAGTCACTGGACAGCTTCTGTAAGTGGCAGAAATCCATCGTGAGCCACAGTGGCCA
TGGCAACGCCATCCCAGAGAATGGTGTGGCAAACCATGACACAGCTGTGCTCATCACACGCTATGACATC
TGCATCTACAAGAACAAACCCTGCGGCACTCTAGGCCTGGCCCCTGTGGGTGGAATGTGTGAGCGTGAGA
GGAGCTGCAGTATCAATGAAGATATCGGCCTGGCCACGGCTTTCACCATTGCCCATGAGATCGGGCACAC
ATTTGGCATGAATCACGATGGCGTGGGAAACGGCTGTGGGGCCCGTGGGCAGGACCCAGCGAAGCTCATG
GCTGCCCACATTACCATGAAGACTAATCCATTCGTGTGGTCATCGTGTAGTCGAGACTACATCACCAGCT
TTCTGGACTCGGGCCTGGGGCTTTGCTTGAATAACCGGCCTCCTAGACAGGACTTCGTGTACCCAACGGT
GGCTCCCGGCCAGGCCTATGATGCTGATGAGCAGTGCCGATTCCAGCATGGAGTCAAATCGCGTCAGTGT
AAATACGGGGAGGTCTGCAGTGAACTGTGGTGTCTGAGCAAGAGCAATCGGTGCATCACCAATAGCATCC
CAGCTGCTGAGGGAACACTGTGCCAAACACACACTATCGACAAAGGGTGGTGCTACAAACGAGTCTGTGT
CCCCTTTGGCTCTCGGCCAGAGGGTGTAGACGGGGCCTGGGGCCCTTGGACTCCATGGGGTGACTGCAGC
AGGTCATGTGGCGGTGGTGTGTCATCTTCTAGCCGTCACTGCGACAGTCCCAGGCCAACCATTGGGGGCA
AGTACTGTCTGGGCGAGAGACGAAGGCACCGGTCCTGCAACACCAATGACTGTCCACCTGGCTCCCAGGA
CTTCAGAGAAATGCAGTGCTCTGAATTTGACAGTGTCCCTTTCCGCGGAAAATTCTACACGTGGAAGACA
TACCGAGGAGGGGGTGTGAAGGCCTGTTCGCTGACTTGCCTAGCAGAAGGCTTCAACTTTTATACGGAGC
GAGCAGCAGCTGTGGTGGATGGAACACCCTGCCGCCCTGACACGGTGGACATTTGTGTCAGCGGCGAGTG
CAAGCATGTAGGCTGTGACAGGGTCCTGGGTTCTGATCTCCGAGAGGACAAATGCCGTGTGTGTGGGGGT
GATGGCAGTGCCTGTGAGACCATTGAAGGTGTCTTTAGCCCAGCTTTGCCAGGAACTGGGTATGAGGACG
TCGTCTGGATCCCCAAAGGCTCGGTCCACATTTTCATCCAAGATCTGAACCTGTCCCTGAGTCACCTGGC
CCTAAAGGGGGACCAAGAGTCTCTGCTACTGGAGGGGCTACCTGGGACCCCCCAACCTCACCGCCTTCCC
CTGGCTGGAACCACATTTCATCTACGGCAGGGGCCGGACCAGGCACAGAGCCTGGAAGCCCTGGGACCCA
TTAATGCATCTCTCATCATCATGGTGCTGGCCCAGGCAGAGTTGCCTGCTCTCCACTACCGCTTCAATGC
ACCCATTGCCCGGGATGCACTGCCTCCCTACTCCTGGCACTATGCCCCCTGGACCAAATGCTCAGCCCAG
TGTGCAGGCGGCAGCCAGGTCCAAGTAGTGGAGTGCCGAAATCAGCTGGACAGCTCAGCAGTGGCCCCAC
ACTACTGTAGTGGCCACAGTAAATTGCCCAAGAGGCAGCGTGCCTGCAACACAGAACCATGTCCACCAGA
TTGGGTTGTAGGAAACTGGTCACGCTGCAGCCGTAGCTGTGACGCTGGTGTGCGTAGCCGCTCAGTGGTG
TGCCAACGCCGGGTGTCTGCTGCAGAGGAAAAAGCCTTAGACGACAGTGCCTGTCCACAGCCACGCCCAC
CTGTGCTGGAGGCCTGCCAAGGCCCAATGTGCCCTCCTGAGTGGGCAACCCTCGACTGGTCTGAGTGTAC
CCCAAGCTGTGGGCCTGGTCTCCGCCACCGAGTGGTCCTTTGTAAGAGTGCAGATCAACGATCTACTCTG
CCCCCTGGGCACTGCCTTCCTGCAGCCAAGCCACCATCTACTATGCGATGTAACTTGCGCCGCTGCCCTC
CTGCCCGCTGGGTGACCAGTGAGTGGGGTGAGTGTTCCACACAGTGTGGCCTCGGCCAGCAGCAGCGCAC
AGTGCGCTGCACCAGCCACACCGGCCAGCCATCTCGAGAGTGCACTGAAGCCTTGCGGCCATCCACCATG
CAGCAGTGTGAGGCCAAGTGTGACAGTGTGGTGCCGCCTGGAGATGGCCCAGAAGAATGCAAGGATGTGA
ACAAGGTGGCTTACTGCCCCCTGGTGCTCAAATTTCAGTTCTGTAGCCGAGCCTACTTCCGCCAGATGTG
CTGCAAAACCTGCCAAGGCCGCTAG

Translation (1104 aa):
MASACQILRWALALGLGLTFKVTHAFRSQDELLSSLESYEIAFPTRVDHNGAMLAFSPPAFRRQRRGAGA
TTESRLFYKVAAPSTHFLLNLTRSPRLLAGHVSVEYWTREGLAWQRAARAHCLYAGHLQGQAGSSHVAVS
TCGGLHGLIVADDEEYLIEPLQGGPKGHRGPEESGPHVVYKRSSLRHPHLDTACGVRDEKPWKGRPWWLR
TLKPPPARPLGNESERGQLGLKRSVSRERYVETLVVADKMMVAYHGRRDVEQYVLAIMNIVAKLFQDSSL
GNIVNILVTRLILLTEDQPTLEITHHAGKSLDSFCKWQKSIVSHSGHGNAIPENGVANHDTAVLITRYDI
CIYKNKPCGTLGLAPVGGMCERERSCSINEDIGLATAFTIAHEIGHTFGMNHDGVGNGCGARGQDPAKLM
AAHITMKTNPFVWSSCSRDYITSFLDSGLGLCLNNRPPRQDFVYPTVAPGQAYDADEQCRFQHGVKSRQC
KYGEVCSELWCLSKSNRCITNSIPAAEGTLCQTHTIDKGWCYKRVCVPFGSRPEGVDGAWGPWTPWGDCS
RSCGGGVSSSSRHCDSPRPTIGGKYCLGERRRHRSCNTNDCPPGSQDFREMQCSEFDSVPFRGKFYTWKT
YRGGGVKACSLTCLAEGFNFYTERAAAVVDGTPCRPDTVDICVSGECKHVGCDRVLGSDLREDKCRVCGG
DGSACETIEGVFSPALPGTGYEDVVWIPKGSVHIFIQDLNLSLSHLALKGDQESLLLEGLPGTPQPHRLP
LAGTTFHLRQGPDQAQSLEALGPINASLIIMVLAQAELPALHYRFNAPIARDALPPYSWHYAPWTKCSAQ
CAGGSQVQVVECRNQLDSSAVAPHYCSGHSKLPKRQRACNTEPCPPDWVVGNWSRCSRSCDAGVRSRSVV
CQRRVSAAEEKALDDSACPQPRPPVLEACQGPMCPPEWATLDWSECTPSCGPGLRHRVVLCKSADQRSTL
PPGHCLPAAKPPSTMRCNLRRCPPARWVTSEWGECSTQCGLGQQQRTVRCTSHTGQPSRECTEALRPSTM
QQCEAKCDSVVPPGDGPEECKDVNKVAYCPLVLKFQFCSRAYFRQMCCKTCQGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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