NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24136.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24136.1 Public Mus musculus 10 Socs2 23 108 98 CCDS HistoryNCBI Gene:216233Re-query CCDS DB by CCDS ID:24136.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24136.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020215.15 ENSMUSP00000020215.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020215.15Link to Ensembl Protein Viewer:ENSMUSP00000020215.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000020215Re-query CCDS DB by Protein ID:ENSMUSP00000020215
Original member Current member EBI ENSMUST00000119917.1 ENSMUSP00000113378.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119917.1Link to Ensembl Protein Viewer:ENSMUSP00000113378.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119917Re-query CCDS DB by Protein ID:ENSMUSP00000113378
Original member Current member EBI ENSMUST00000170690.7 ENSMUSP00000129331.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170690.7Link to Ensembl Protein Viewer:ENSMUSP00000129331.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170690Re-query CCDS DB by Protein ID:ENSMUSP00000129331
Original member Current member EBI ENSMUST00000172070.7 ENSMUSP00000131875.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172070.7Link to Ensembl Protein Viewer:ENSMUSP00000131875.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172070Re-query CCDS DB by Protein ID:ENSMUSP00000131875
Original member Current member NCBI NM_001168655.1 NP_001162126.1 Accepted alive Link to Nucleotide Sequence:NM_001168655.1Link to Protein Sequence:NP_001162126.1Re-query CCDS DB by Nucleotide ID:NM_001168655Re-query CCDS DB by Protein ID:NP_001162126Link to BLAST:NP_001162126.1
Original member Current member NCBI NM_001168656.1 NP_001162127.1 Accepted alive Link to Nucleotide Sequence:NM_001168656.1Link to Protein Sequence:NP_001162127.1Re-query CCDS DB by Nucleotide ID:NM_001168656Re-query CCDS DB by Protein ID:NP_001162127Link to BLAST:NP_001162127.1
Original member Current member NCBI NM_001168657.1 NP_001162128.1 Accepted alive Link to Nucleotide Sequence:NM_001168657.1Link to Protein Sequence:NP_001162128.1Re-query CCDS DB by Nucleotide ID:NM_001168657Re-query CCDS DB by Protein ID:NP_001162128Link to BLAST:NP_001162128.1
Original member Current member NCBI NM_007706.4 NP_031732.1 Accepted alive Link to Nucleotide Sequence:NM_007706.4Link to Protein Sequence:NP_031732.1Re-query CCDS DB by Nucleotide ID:NM_007706Re-query CCDS DB by Protein ID:NP_031732Link to BLAST:NP_031732.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001162126.1 198 O35717 198 100% 0 0
NP_001162127.1 198 O35717 198 100% 0 0
NP_001162128.1 198 O35717 198 100% 0 0
NP_031732.1 198 O35717 198 100% 0 0

Chromosomal Locations for CCDS 24136.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 95412653 95413110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 95414831 95414969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGACCCTGCGGTGCCTGGAGCCCTCCGGGAATGGAGCGGACAGGACGCGGAGCCAGTGGGGGACCGCGG
GGTTGCCGGAGGAACAGTCCCCCGAGGCGGCGCGTCTGGCGAAAGCCCTGCGCGAGCTCAGTCAAACAGG
ATGGTACTGGGGAAGTATGACTGTTAATGAAGCCAAAGAGAAATTAAAAGAGGCTCCAGAAGGAACTTTC
TTGATTAGAGATAGTTCGCATTCAGACTACCTACTAACTATATCCGTTAAGACGTCAGCTGGACCGACTA
ACCTGCGGATTGAGTACCAAGATGGGAAATTCAGATTGGATTCTATCATATGTGTCAAGTCCAAGCTTAA
ACAGTTTGACAGTGTGGTTCATCTGATTGACTACTATGTCCAGATGTGCAAGGATAAACGGACAGGCCCA
GAAGCCCCACGGAATGGGACTGTTCACCTGTACCTGACCAAACCTCTGTATACATCAGCACCCACTCTGC
AGCATTTCTGTCGACTCGCCATTAACAAATGTACCGGTACGATCTGGGGACTGCCTTTACCAACAAGACT
AAAAGATTACTTGGAAGAATATAAATTCCAGGTATAA

Translation (198 aa):
MTLRCLEPSGNGADRTRSQWGTAGLPEEQSPEAARLAKALRELSQTGWYWGSMTVNEAKEKLKEAPEGTF
LIRDSSHSDYLLTISVKTSAGPTNLRIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDYYVQMCKDKRTGP
EAPRNGTVHLYLTKPLYTSAPTLQHFCRLAINKCTGTIWGLPLPTRLKDYLEEYKFQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH