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Report for CCDS19746.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19746.1 Public Mus musculus 5 Mdh2 23 108 98 CCDS HistoryNCBI Gene:17448Re-query CCDS DB by CCDS ID:19746.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19746.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019323.10 ENSMUSP00000019323.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019323.10Link to Ensembl Protein Viewer:ENSMUSP00000019323.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000019323Re-query CCDS DB by Protein ID:ENSMUSP00000019323
Original member Current member NCBI NM_008617.2 NP_032643.2 Accepted alive Link to Nucleotide Sequence:NM_008617.2Link to Protein Sequence:NP_032643.2Re-query CCDS DB by Nucleotide ID:NM_008617Re-query CCDS DB by Protein ID:NP_032643Link to BLAST:NP_032643.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032643.2 338 P08249 338 100% 0 0

Chromosomal Locations for CCDS 19746.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 135778736 135778801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135783305 135783473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135784184 135784267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135785929 135786038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135786233 135786358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135787541 135787618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135789201 135789300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135789626 135789777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135790077 135790208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGCTGTCCGCTCTCGCCCGTCCTGCCGGCGCCGCTCTCCGCCGCAGCTTCAGCACTTCGGCCCAGAACA
ATGCTAAAGTGGCTGTCCTGGGAGCTTCTGGGGGCATTGGGCAACCCCTTTCACTCCTGCTGAAGAACAG
CCCCCTAGTGAGCCGCCTGACCCTCTACGATATCGCTCACACACCTGGTGTGGCAGCAGATCTGAGTCAC
ATTGAGACCAGAGCAAATGTGAAAGGCTACCTTGGACCGGAGCAGTTGCCAGATTGCCTCAAAGGTTGTG
ATGTGGTGGTCATCCCAGCCGGAGTGCCCAGGAAACCAGGAATGACACGGGATGACCTGTTCAACACCAA
CGCTACCATTGTGGCCACCCTGACGGCTGCCTGTGCCCAGCACTGTCCTGAAGCCATGGTTTGCATCATT
GCCAACCCAGTGAACTCCACCATCCCCATCACAGCAGAAGTTTTCAAGAAGCACGGTGTGTACAACCCTA
ACAAGATCTTCGGTGTGACAACCCTTGACATCGTCAGAGCGAACACGTTTGTGGCAGAGCTAAAGGGTTT
GGATCCAGCTCGAGTCAACGTGCCTGTCATTGGCGGCCACGCCGGGAAGACGATCATCCCCCTGATCTCT
CAGTGTACCCCGAAGGTTGACTTTCCCCAAGACCAGCTGGCCACACTCACCGGGAGGATCCAGGAGGCTG
GCACAGAAGTCGTGAAGGCCAAGGCTGGAGCAGGTTCTGCCACTCTGTCCATGGCTTATGCTGGAGCCCG
CTTTGTCTTCTCCCTCGTGGACGCCATGAACGGGAAGGAAGGAGTCGTTGAGTGTTCTTTTGTTCAGTCC
AAAGAGACGGAATGCACTTACTTCTCTACGCCCTTGCTCTTGGGGAAAAAGGGCCTGGAGAAGAACCTGG
GCATTGGCAAGATCACTCCTTTTGAGGAAAAAATGATTGCCGAGGCTATCCCTGAGCTGAAAGCCTCCAT
CAAGAAAGGCGAGGACTTTGTCAAGAACATGAAGTGA

Translation (338 aa):
MLSALARPAGAALRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSH
IETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMVCII
ANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLIS
QCTPKVDFPQDQLATLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVQS
KETECTYFSTPLLLGKKGLEKNLGIGKITPFEEKMIAEAIPELKASIKKGEDFVKNMK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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