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Report for CCDS14127.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14127.2 Public Homo sapiens X STS 24 110 108 CCDS HistoryNCBI Gene:412Re-query CCDS DB by CCDS ID:14127.2Re-query CCDS DB by GeneID:412See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 14127.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000217961.5 ENSP00000217961.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000217961.5Link to Ensembl Protein Viewer:ENSP00000217961.5Re-query CCDS DB by Nucleotide ID:ENST00000217961Re-query CCDS DB by Protein ID:ENSP00000217961
Original member Current member EBI ENST00000666110.2 ENSP00000499472.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000666110.2Link to Ensembl Protein Viewer:ENSP00000499472.2Re-query CCDS DB by Nucleotide ID:ENST00000666110Re-query CCDS DB by Protein ID:ENSP00000499472
Original member Current member EBI ENST00000674429.1 ENSP00000501534.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000674429.1Link to Ensembl Protein Viewer:ENSP00000501534.1Re-query CCDS DB by Nucleotide ID:ENST00000674429Re-query CCDS DB by Protein ID:ENSP00000501534
Original member Current member NCBI NM_000351.7 NP_000342.3 Accepted alive Link to Nucleotide Sequence:NM_000351.7Link to Protein Sequence:NP_000342.3Re-query CCDS DB by Nucleotide ID:NM_000351Re-query CCDS DB by Protein ID:NP_000342Link to BLAST:NP_000342.3
Original member Current member NCBI NM_001320752.2 NP_001307681.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001320752.2Link to Protein Sequence:NP_001307681.2Re-query CCDS DB by Nucleotide ID:NM_001320752Re-query CCDS DB by Protein ID:NP_001307681Link to BLAST:NP_001307681.2
Original member Current member NCBI NM_001320753.2 NP_001307682.1 Accepted alive Link to Nucleotide Sequence:NM_001320753.2Link to Protein Sequence:NP_001307682.1Re-query CCDS DB by Nucleotide ID:NM_001320753Re-query CCDS DB by Protein ID:NP_001307682Link to BLAST:NP_001307682.1
Original member Current member NCBI NM_001320754.2 NP_001307683.1 Accepted alive Link to Nucleotide Sequence:NM_001320754.2Link to Protein Sequence:NP_001307683.1Re-query CCDS DB by Nucleotide ID:NM_001320754Re-query CCDS DB by Protein ID:NP_001307683Link to BLAST:NP_001307683.1

Chromosomal Locations for CCDS 14127.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7253200 7253336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7257242 7257363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7257466 7257588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7259349 7259772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7275951 7276087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7305046 7305183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7325339 7325498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7333986 7334107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7349888 7350261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGAAGATCCCTTTCCTCCTACTGTTCTTTCTGTGGGAAGCCGAGAGCCACGCAGCATCAAGGCCGAACA
TCATCCTGGTGATGGCTGACGACCTCGGCATTGGAGATCCTGGGTGCTATGGGAACAAAACTATCAGGAC
TCCCAATATCGACCGGTTGGCCAGTGGGGGAGTGAAACTCACTCAGCACCTGGCAGCATCACCGCTGTGC
ACACCAAGCAGGGCAGCCTTCATGACTGGCCGGTACCCTGTCCGATCAGGAATGGCATCTTGGTCCCGCA
CTGGAGTTTTCCTCTTCACAGCCTCTTCGGGAGGACTTCCCACCGATGAGATTACCTTTGCTAAGCTTCT
GAAGGATCAAGGTTATTCAACAGCACTGATAGGGAAATGGCACCTTGGGATGAGCTGTCACAGCAAGACT
GACTTCTGTCACCACCCTTTACATCACGGCTTCAATTATTTCTATGGGATCTCTTTGACCAATCTGAGAG
ACTGCAAGCCCGGAGAGGGCAGTGTCTTCACCACGGGCTTCAAGAGGCTGGTCTTCCTCCCCCTGCAGAT
CGTCGGGGTCACCCTCCTTACCCTTGCTGCACTCAATTGTCTGGGGCTACTCCACGTGCCTCTAGGCGTT
TTTTTCAGCCTTCTCTTCCTAGCAGCCCTAATCCTGACCCTTTTCTTGGGCTTCCTTCATTACTTCCGGC
CCCTGAACTGCTTCATGATGAGGAACTACGAGATCATTCAGCAGCCCATGTCCTATGACAATCTCACCCA
GAGGCTAACGGTGGAGGCGGCCCAGTTCATACAGCGGAACACTGAGACTCCGTTCCTGCTTGTCTTGTCC
TACCTCCACGTGCACACAGCCCTGTTCTCCAGCAAAGACTTTGCTGGCAAAAGTCAACACGGAGTCTACG
GGGATGCTGTTGAGGAAATGGACTGGAGTGTGGGGCAGATCTTGAACCTTCTGGATGAGCTGAGATTGGC
TAATGATACCCTCATCTACTTCACATCGGACCAGGGAGCACATGTAGAAGAAGTGTCTTCCAAAGGAGAA
ATTCATGGCGGAAGTAATGGGATCTATAAAGGAGGAAAAGCAAACAACTGGGAAGGAGGTATCCGGGTTC
CAGGCATCCTTCGTTGGCCCAGGGTGATACAGGCTGGCCAGAAGATTGATGAGCCCACTAGCAACATGGA
CATATTTCCTACAGTAGCCAAGCTGGCTGGAGCTCCCTTGCCTGAGGACAGGATCATTGATGGACGTGAT
CTGATGCCCCTGCTTGAAGGAAAAAGCCAACGCTCCGATCATGAGTTTCTCTTCCATTACTGCAACGCCT
ACTTAAATGCTGTGCGCTGGCACCCTCAGAACAGCACATCCATCTGGAAGGCCTTTTTCTTCACCCCCAA
CTTCAACCCCGTGGGTTCCAACGGATGCTTTGCCACACACGTGTGCTTCTGTTTCGGGAGTTATGTCACC
CATCACGACCCACCTTTACTCTTTGATATTTCCAAAGATCCCAGAGAGAGAAACCCACTAACTCCAGCAT
CCGAGCCCCGGTTTTATGAAATCCTCAAAGTCATGCAGGAAGCTGCGGACAGACACACCCAGACCCTGCC
AGAGGTGCCCGATCAGTTTTCATGGAACAACTTTCTTTGGAAGCCCTGGCTTCAGCTGTGCTGTCCTTCC
ACCGGCCTGTCTTGCCAGTGTGATAGAGAAAAACAGGATAAGAGACTGAGCCGCTAG

Translation (578 aa):
MKIPFLLLFFLWEAESHAASRPNIILVMADDLGIGDPGCYGNKTIRTPNIDRLASGGVKLTQHLAASPLC
TPSRAAFMTGRYPVRSGMASWSRTGVFLFTASSGGLPTDEITFAKLLKDQGYSTALIGKWHLGMSCHSKT
DFCHHPLHHGFNYFYGISLTNLRDCKPGEGSVFTTGFKRLVFLPLQIVGVTLLTLAALNCLGLLHVPLGV
FFSLLFLAALILTLFLGFLHYFRPLNCFMMRNYEIIQQPMSYDNLTQRLTVEAAQFIQRNTETPFLLVLS
YLHVHTALFSSKDFAGKSQHGVYGDAVEEMDWSVGQILNLLDELRLANDTLIYFTSDQGAHVEEVSSKGE
IHGGSNGIYKGGKANNWEGGIRVPGILRWPRVIQAGQKIDEPTSNMDIFPTVAKLAGAPLPEDRIIDGRD
LMPLLEGKSQRSDHEFLFHYCNAYLNAVRWHPQNSTSIWKAFFFTPNFNPVGSNGCFATHVCFCFGSYVT
HHDPPLLFDISKDPRERNPLTPASEPRFYEILKVMQEAADRHTQTLPEVPDQFSWNNFLWKPWLQLCCPS
TGLSCQCDREKQDKRLSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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